Array 1 27004-25776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMQV010000046.1 Roseiconus lacunae strain JC742 soapdenovo_K_105_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27003 28 100.0 32 ............................ TTTCAGTATTCGAATCTCGCAATGTGGTGCGG 26943 28 100.0 32 ............................ CAACGTGGCCGAAGCAAAAGCGTCGTATGACG 26883 28 100.0 32 ............................ TACAACGGAACCGTTTGGAAGTGGCAGCCGAA 26823 28 100.0 32 ............................ CGTTGGGCGGAACATGACAGTCTAAGGTCTGA 26763 28 100.0 32 ............................ TTACCTGACAAGACGGACCCGACGAAAAGCTA 26703 28 100.0 32 ............................ ATCTTTCTTGCGACGCTTCTTGCAAATCCGAA 26643 28 100.0 32 ............................ TCGCGAAATGCCGGTTCATCGCAAAGAAGTCT 26583 28 100.0 32 ............................ CAGTAGATGCAGTTCTTGCATTTCTTAAGCGT 26523 28 100.0 32 ............................ TTGCTTCACCGATTGAAGTCCAAGTCGGTGAC 26463 28 100.0 32 ............................ TGCAGAAGCGGCAACTGGGTCGGGGAGCGTGT 26403 28 100.0 32 ............................ TGAAAGCGCGGGCGATCGTCGCAAACGACCTG 26343 28 100.0 32 ............................ GAGTTCTCGCTTCCATCGCCGTCGATCATGTG 26283 28 100.0 32 ............................ TTTAATCCGCTGTTCAATCCGCTTTCCAATCT 26223 28 100.0 32 ............................ TTTATCGGGCAATGTGCCACAAAACGTGAAAA 26163 28 100.0 32 ............................ CGTAGTGATGGCGGAACGTCCGAATTGGATGT 26103 28 100.0 32 ............................ TTTCGATTCGTCGCGGCGTCAAGCGGTTTCCC 26043 28 100.0 32 ............................ TCCCAGTGACCGAGGGCGGTTCGGTATCCTTG 25983 28 96.4 32 .............C.............. TGTTTCTTGTTGACGAAAACTTCGAGCAGACA 25923 28 100.0 32 ............................ CCACACCCGGCGATGGTCGCCGGTGCCCCGCT 25863 28 100.0 32 ............................ ATCAGCCGCAAGTGAACCGAGGTCTAACGTGT 25803 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTCGCTGCCGCATACGCAGCTCAGAAA # Left flank : CAGGTTGCATCAATCGGGCGGATGCTCAGGCGGCTTGAGCCCAGTGGCGACCAACCCCCGTTCAAATATGGACTTAACGCTTGAGTGGGTTTCCGGATAGGTTCTCAATCCATT # Right flank : GTTGGAACTCCAACCGAGCCGCCTTGCACGACTCCCGTCTGAATTGCAGACGGGTGTGGGCATCTACTGTTGGGACGTTTTTGTTTAGCGACGTCCGCCGCGACTTGACCGTCCTCCTCTTCGGTTGCCGCCAAAGCTGCCGCCCCGGCTTTGCGTGCGGCTACCATTCTGGGCACGCAAAGATGACGATGCAGACAAGTTGCCGCTTCCGCGACTGAAACCTTGACTGCTATCACGACCGCTCATCGAGCTTGCTCGTGATGCACCTGCTGAGCGACCGAATCGGCTGCTTGCGTTTCCACCGTGTGGCAAAGAATTCGATCGGGCACCGAGGCCTTGTCCGGCCGATGCGTCGTTGAGATGACCAGCTTGCCCGCTGTTGCGACCGAACGACCGTTGAGCGCTCGATCCCGATTGGTCCTCGCGAGCTGCGCTTTGCGATTGACTTCCGAACTGTCCGTCGCCGGCAGTGACCGAGTGGCTGCCGTTGTCAGTCGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATACGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 222713-224180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMQV010000089.1 Roseiconus lacunae strain JC742 soapdenovo_K_105_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 222713 28 100.0 32 ............................ ATTGACTCATAAGACGAGAACGCAATGCGTCC 222773 28 100.0 32 ............................ GTGTGACGTTCCGTTGTCACGCGGCAATCCGT 222833 28 100.0 32 ............................ TGGAAATTGTCCACAGTGCAGATGGATACAAT 222893 28 100.0 32 ............................ TAGAAGGGCATCGTGTGTTTTGCACCGACACC 222953 28 100.0 32 ............................ CCGAGGAAGATTCCACATCGGTAACGCAAACA 223013 28 100.0 32 ............................ TATGGACGCGACAATCGCGGTGAACTCTACAC 223073 28 100.0 32 ............................ CATCGGAATATGTGTTGATGTGGGTGAAGAAA 223133 28 100.0 32 ............................ TCCCAAGGATGACGTGGAGGACAGGCCAACGT 223193 28 100.0 32 ............................ CATCGGAAGATGTGTTGATGTGGGTGAAGAAA 223253 28 100.0 32 ............................ GTTATGATTACGCACGCTCATACGTTAAGCTC 223313 28 100.0 32 ............................ TGCAAGAACTGATAGAGCAATTCAAAAACCAG 223373 28 100.0 32 ............................ AACAGTTCACCAATCTGCCCTTCGGCCTTTCG 223433 28 100.0 32 ............................ TTCCTGATGGTGTTATTGGTGGCGCTGACACC 223493 28 100.0 32 ............................ TTTACGTTGCCCGTGAAGCTGACCAACAACAT 223553 28 100.0 32 ............................ TAGTATCTCCTGGAGTCTCGCCATTGCCGGGT 223613 28 100.0 32 ............................ CTCCCCCGGCCTGTAGACCGTTATGATTACGC 223673 28 100.0 32 ............................ TTTCACGCTGTCCGCACTGACGTCCGGTGCCC 223733 28 100.0 32 ............................ TTTCAATATCCGGATCTCGCAATGCGGTGCGG 223793 28 100.0 32 ............................ TTGAAGACTTTGCTGACTTGCAGCGAAATCTC 223853 28 100.0 32 ............................ TCGAGCTCGCGATCCAGTTTTTTGACGGCGCG 223913 28 100.0 32 ............................ CCCAGTTTGTTCCGTCTGGATGAATCGACCAG 223973 28 100.0 32 ............................ TTGACACGCAATTGAGCACACGCAGTAAAGTT 224033 28 100.0 32 ............................ TTGCCGAGATAGTCACCCTTCACGCTGTCCGC 224093 28 100.0 32 ............................ ATTCATCAATCACACGGATCTGTTCGTCGGTC 224153 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCGCTGCCGCATACGCAGCTCAGAAA # Left flank : GGAATTGCAGGCGATCGAGTGGTCACGTTCGATGGTCGGACTTGGGGACTATATCGATCGATCCGCCCCACGTTCAACGCCGAGAACAGTAGATCGTTTCGCGGCCTTTGCGAGACGTCAGCCAAAGGGTTCGCCAGAGCGATTGATGCGTCGTGCGATGAAGCGACACGGGATTGATGAGGCGGAAGCAAGGCGTCGATACGCAAACTATTCGATCGACCGCTGCCGATTGCCCTGGGTCGACATGAAAAGCGAGGGATCGCGACATCAATTTCGACTGTTCATCGAGCGAATCGAGCGTCCGGCATCGACTGATTGGGGTTTCAGCACCTATGGGCTAAGTCGCAGCGTAGGGTTGCCAGATTTTTGACCCTCTTTTGATAGGACATTCGAAATCCCCGTGATTAACGAAGTCGTTGAAAGGGCCTACAGGAAAGGGTAGAAAGCCTTTCATCGGCGCAACACAAGCCTCTGGAACGTCTTAGATCATTCCAGAGGCT # Right flank : TCGTCGATCAGCCCCGCGAAGTCAGAGCCTATCCGGAAACTGGTATTTCCTGAAAGCCCGATAATCGCCACACTTTGAGCTCCTCAAAGCAACGGAGTGTGAGATGACAGAGGGCAACCGAAAACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATACGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13666-11808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMQV010000156.1 Roseiconus lacunae strain JC742 soapdenovo_K_105_156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 13665 36 100.0 38 .................................... TTCGGGCAAGAACTGAAAGCGTTGCTTAACGCGTACCG 13591 36 97.2 35 ........A........................... GATCGCAAACGTATCGAAGTGGTCGCCCTGATAGA 13520 36 97.2 38 ........A........................... CCACGGCCCTGGACGCGTGACGCACTTCGTGTTCGGCG 13446 36 97.2 37 ........A........................... TTTGACGATTGGTTGAAAATCCGTCAGCGGACGATCG 13373 36 100.0 36 .................................... TCGGGTGCATAACAAACGTGTGTGGCGTATCGATGC 13301 36 100.0 38 .................................... GAGATGGACCCAGATACCGGGGAACCTGCATTGGACGA 13227 36 100.0 38 .................................... GCAAAGCGTTTTGGCGCGAAAGGTGTAGGGATAGAGAT 13153 36 100.0 37 .................................... ATGCCGTGATCGCCGACAAGGCTGAGCAAAAGAGCAA 13080 36 100.0 35 .................................... TGTAGCCTCAGTTGCCGATCAATCTCCGCTGCGAT 13009 36 100.0 37 .................................... TTGAATCAGTCACGCTGACCATCGTTGATGAAGACGG 12936 36 100.0 37 .................................... GTGTTGGCTCGCGATTCAGTGGGATTTGCTCGACCAG 12863 36 100.0 38 .................................... TGACTGAGGTGACGGTGACTGAACCGGAGCCTGAACCC 12789 36 100.0 36 .................................... GAAGGGGCTTTGTATCGCATGGTCACGCGACTGCAT 12717 36 100.0 37 .................................... AGCTTGTGTTTCGAGTCATCTAGCAATTCATCTACCT 12644 36 100.0 37 .................................... ACAAGACGCTGCCAGACAAACGGATCATCTTCGACAT 12571 36 100.0 39 .................................... GGCATCGGCTTGGGCTTTGCCTTCGGGCCCGAGCTTTTC 12496 36 100.0 39 .................................... GTCGACGAACCATCGGAAATCGACCCGCGTGACCCGTTC 12421 36 100.0 37 .................................... TTACCGGGTGTTGTTATAGGTGTTGGTTTTTGTGTGT 12348 36 100.0 36 .................................... AGCTATGTCTCGTAAATCCACCACGCAACCCGTTAC 12276 36 100.0 35 .................................... GGTTTGGCCGCTGTCAAAGAAGAAAAGGCACCTGT 12205 36 100.0 36 .................................... AGCGTTGCATTGGCGACACACTGGGCCACGCTGTCG 12133 36 100.0 35 .................................... GAAAGTGCAGCGTTCGACTCGCGAACCAACCGCAT 12062 36 100.0 36 .................................... TGTCGGCACGGTGATAAAGCCAGATCGTGACGTTGA 11990 36 100.0 36 .................................... CTTCGGCCGTATCGACGCGCAGAACCGTCTTGGTGG 11918 36 100.0 39 .................................... TGTAACGAATGGAACTAGCTTTGGATCTGCCATTACTCC 11843 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 26 36 99.7 37 GCTTCAATGAGGCCGCGCTCGATGGAGCGCGGAAAG # Left flank : CGGACTGCGATGTTTACTCGACCGCAGTGTGCTTGTACCGAATGCTCACCGGACGTTTCCCGCATGACTCTGATTCGCCGGCCGAAATCGTTCGTCAAAAAATGAACTTCATGCCCACGCCTATCGATGAAATCGACACCACACTCCCCGCAGAATTATCAGCACTACTTCAGCGCGCGCTACACCAAGATCCACAACGTCGCCTCGAAACGGCGGAGGAATTCGCCCGAGAACTGGAACCGTTTGGTTTGTAGTTCGCAAGCGTTCCGCGTCAATCTCGGGTTGGATGGAGCGATGAATCAGAGATTTAATTGGGTTGGGCAGGGAGGCACCCTGTAACTCTCGCAACGTGTCATCCGGGTGAAACACCATGTTCGGAAGCTTCCCCGTTAGCAGGCGATAGAGCGTAGCACCACAAGAGAACAAGTCTTCTTCTGGCCGGCATCGATGAATGCGTGGAAAGTCTAATATTTGCGCCCCCCATTGATCGACTGAAACTT # Right flank : GGCCCTGGCATGGGATGCCGGGAATTTAGCAGATTTGAGGCCGACTTTGCGAGCGGTCGGTGCGAAAGGCAGGAACTGTTCGTCAAATGTTGACCTTTGAGCATCATTTCAATCCGTGATTTGCCGGACTGCGAGAGGGTGCCGGGGATGGGGCGCCGCCGAACCTCTCGCACCCCCTTTTTAAAAAAATGAGGATCTCATTACCGTGTCACGAAGACCGGATAGTCGTCGATCTCGCCGCTCAGCTGGCGGGCGAGCAACCGAGTTTGAATCTCCAGCAGCCGTCGATAGCTTACCCGATAACCGAACAACGGATGAGTCACCGTGGCATCCATTCGTTTCTCGTACGCCATTAAAAAATGCTTTCGGCCGGTCGGGGTCAGCACCACCGACTGGCCCGCCACCAGAAAATGATCTGGCGTCACCATTCGATTGTTAATCGCCGACAACACCGCCGACTCCGCAATCAACGGGCGGAACGGTTCCATCAAGTCGAGCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCGCTCGATGGAGCGCGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.00,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //