Array 1 1006077-1005652 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHLGX010000009.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-046 tig00000001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	==========================	=========================================	==================
   1006076	    26	 100.0	    40	..........................	AGAAGCTAATCCAAGAGATTTAAGCATATTAGACGTCTCG 	
   1006010	    26	 100.0	    41	..........................	AGCTGTTGGTGGACGACCGTAACGTTTCTCAAAGTGTCTCG	
   1005943	    26	 100.0	    39	..........................	TCCTCTGAACAGAACCCCATAAATAATACCTAGGTCTCG  	
   1005878	    26	 100.0	    41	..........................	TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG	
   1005811	    26	  88.5	    41	...TT.G...................	TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG	
   1005744	    26	  88.5	    41	...TT.G...................	CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG	
   1005677	    26	  88.5	     0	...TT.G...................	|                                        	
==========	======	======	======	==========================	=========================================	==================
         7	    26	  95.1	    41	CCCCATACGGGCGAGTGGATTGAAAT	                                         	       

# Left flank :   TACCAGTCGCATGGATACCCTAAAAAATGGTGCACTGTTAGTATTGGAAAATTTATAAACATGGAGAAAAAGATGAAAACAATAATACGTGAGCTATTGGTTGAGGATGTTAAAGGAGATGCTGAGGTTGCTTATACCTTACTAGCTTCTGAGCATTCTCTTTTTGTTCCTTCCAAATTGGAGCAGGCTTCCGACAAGCTGATTCTAGAGGCTAGCCTTGATGACGTGTATGACTGGTCAGCCCTAGAGACGATGATCGTTGAGGAAAAGCTAAGGCATTTGCTAAATCTTAGCGAGCTGTTTGATCAGCTCTCAGACTCAAAGTTCACCTACAGCTTTACACCAGATAATCTGGTCTTTAACCGTAATGCAGAGCCGCGTTTGATCTTTCGAGGGATCAAGGATCAGGTTCCTCCTTACCAGCCGCTTGAGCCTGAGGCCTTTGTGGGTACATTGAAATTTACCAGAGTAGTAATTTGGTAAGAAATAGCGACGTCTCG
# Right flank :  TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAGA

# Questionable array : NO	 Score: 9.01
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCCATACGGGCGAGTGGATTGAAAT
# Alternate repeat :   GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.80,-6.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [0-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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