Array 1 433-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVB01000031.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001670 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 432 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 371 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 310 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 249 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 188 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 127 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCCGTGATTCGACCTCTAAATGGGTTCTCATTCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18449-17139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVB01000031.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001670 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18448 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 18387 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 18326 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 18265 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 18204 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 18143 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 18082 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 18021 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 17960 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 17899 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 17838 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 17777 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 17716 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 17655 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 17594 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 17533 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA G [17516] 17471 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 17410 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 17349 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 17288 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 17227 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 17166 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11830-11190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVB01000039.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001670 contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11829 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11768 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11707 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11646 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11585 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11524 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11463 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11402 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11341 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11280 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11219 29 93.1 0 A...........T................ | A [11192] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGTTTATTTTTTATTCGATATTGTTTTTGAATA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //