Array 1 108050-106447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFE01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44696 N44696_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108049 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107988 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107927 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107866 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107799 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107738 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107677 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107616 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107555 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107494 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107433 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107372 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107311 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107250 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107189 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107128 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107067 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107006 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106903 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106842 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106781 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106720 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106659 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106598 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106537 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106476 29 96.6 0 A............................ | A [106449] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125434-124308 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFE01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44696 N44696_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125433 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125372 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125311 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125250 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125189 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125128 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125067 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125006 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124945 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124884 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124823 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124762 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124701 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124640 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124579 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124518 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124457 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124396 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124335 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //