Array 1 18014-16764 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMOA01000016.1 Escherichia coli strain MOD1-EC6585 MOD1-EC6585_16_length_106784_cov_37.5362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18013 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 17952 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 17891 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 17830 29 96.6 32 ............T................ ACAATCAGGGAACGATTGTTGACACTGTAAAA 17769 29 96.6 32 ..........T.................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 17708 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 17647 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 17586 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 17525 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 17464 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 17403 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 17342 29 100.0 32 ............................. TTATAGCAGCACTCCACCAGCTCGAGCAGCAG 17281 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 17220 29 100.0 32 ............................. TTATAGCAGCACTCCACCAGCTCGAGCAGCAG 17159 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 17098 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17036 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 16975 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 16914 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 16853 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 16792 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCCGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92610-91544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMOA01000018.1 Escherichia coli strain MOD1-EC6585 MOD1-EC6585_18_length_96519_cov_40.011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92609 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 92548 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 92487 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 92426 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 92365 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 92304 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 92243 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 92182 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 92121 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 92060 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 91999 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 91938 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 91877 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 91816 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 91755 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 91694 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 91633 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 91572 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTAGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //