Array 1 43984-45049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHT010000013.1 Escherichia coli strain SX2G NODE_13_length_126094_cov_116.410754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43984 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44045 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 44106 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44167 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44228 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44289 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44350 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44411 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44472 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44533 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 44594 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 44655 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 44716 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 44777 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 44838 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 44899 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 44960 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45021 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60551-61984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHT010000013.1 Escherichia coli strain SX2G NODE_13_length_126094_cov_116.410754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60551 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 60612 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 60674 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 60735 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 60796 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 60857 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 60918 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 60979 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 61040 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 61101 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 61163 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 61224 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 61285 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 61346 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 61407 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 61468 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 61529 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 61590 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 61651 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 61712 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 61773 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 61834 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 61895 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 61956 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //