Array 1 129589-129159 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIFH010000004.1 Streptococcus pyogenes strain K44582, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=================================	==================================	==================
    129588	    33	  97.0	    33	A................................	TCTGCGATTAACTCAAAGCCGTTTTGGACTAGC 	
    129522	    33	 100.0	    33	.................................	CGCTTGTTAGTAGATGGATTGCTTGTAGATTAG 	
    129456	    33	 100.0	    33	.................................	ATAAGGAATTGTGACATTATCTTTAGCCATTTC 	
    129390	    33	 100.0	    33	.................................	CTCTTTAGTACTGTCGATCACCGTAAAGACATC 	
    129324	    33	  97.0	    33	A................................	CGCTTGTTAGTAGATGGATTGCTTGTAGATTAG 	
    129258	    33	 100.0	    34	.................................	ATGTGTGATTTTGAGCGTTCCCAATGCTTTTTCA	
    129191	    33	  93.9	     0	A...............................G	|                                 	
==========	======	======	======	=================================	==================================	==================
         7	    33	  98.3	    33	CGTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                  	       

# Left flank :   TAAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGTAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGC
# Right flank :  ATGAACCTGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTTTATTTAGGTATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAGACCTTAGCCTTCATTTTTGGGTTATCCACTATCTTTGTGATTTTAGGTTATGGGGCTGGTTTTTTGGGAAATATCCTTTATGCGGTATGGTTTCGGTCCTTCCTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA

# Questionable array : NO	 Score: 9.17
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CGTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   AGTCTCACCCTTCATGGGTGAGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.52%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-7.20,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : NA
//