Array 1 5191-6040 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248406.1 Porphyromonas gingivalis SJD11 scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5191 37 100.0 41 ..................................... CTATCAGACTATGGCATCGAAACATATGTTTACATGTATGT 5269 37 100.0 41 ..................................... CTATCAGACTATGGCATCGAAACATATGTTTACATGTATGT 5347 37 100.0 41 ..................................... CTATCAGACTATGGCATCGAAACATATGTTTACATGTATGT 5425 37 100.0 34 ..................................... AACGTATTACTAAAGCAGAAAAACAAGCATTTGT 5496 37 100.0 34 ..................................... CTACAAGAGAGGTTCAGAGGAATGGAAACTCATT 5567 37 100.0 37 ..................................... TTATTATCAAGGAGTTCCTTTTGGAACTCGTAATGGG 5641 37 100.0 36 ..................................... AAACAAGTGGGGAATCCGGGAGGAAGGAGAATTAAC 5714 37 100.0 37 ..................................... ATGTTGAAATGCATTACACAGGAGGCAAGGAAGCAAG 5788 37 100.0 35 ..................................... CCCATACTCATCTCCATTGCTTTATGGGGCATGAT 5860 37 100.0 35 ..................................... CCCATACTCATCTCCATTGCTTTATGGGGCATGAT 5932 37 100.0 35 ..................................... CCCATACTCATCTCCATTGCTTTATGGGGCATGAT 6004 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 100.0 37 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : TACGAGCCTGTCCCCCGAAAACGACCGAACTTTCCTTTTCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCGGTGGTGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAATTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGTTGCACAACTCGCCTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACAAAGGAGGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATAAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGACAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACTTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGGGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 98-3117 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248426.1 Porphyromonas gingivalis SJD11 scaffold38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 98 29 100.0 34 ............................. CCTAAGCGGTTCAGGTGTTCTACACGAGCGCTAG 161 29 100.0 38 ............................. AAGCATGAGCTTCTTCTTTATCCGATAGACTTCTGTTG 228 29 100.0 37 ............................. TTGGACAGATAGCCCTGCTTCATCGTGTCCGCCACTG 294 29 100.0 37 ............................. TGTAGTTGCCCGCCTCCTTTTGGGATTCTGTAGGATG 360 29 100.0 37 ............................. TAAACCTTTTACGCTCTAAGCCAATAACATAAACTGG 426 29 100.0 37 ............................. TAAACCTTTTACGCTCTAAGCCAATAACATAAACTGG 492 29 100.0 37 ............................. TAAACCTTTTACGCTCTAAGCCAATAACATAAACTGG 558 29 100.0 38 ............................. TAGATACAATTATTATATGAGAACTTTTGCAACCTTTG 625 29 96.6 38 ....T........................ TCTTAGTTGTTGTTCTTTTTTTTAATCAAACAAATCAG 692 29 100.0 37 ............................. GTGTTTGCAACTGCAGAGGCGGGTACGCGCAGGGTTG 758 29 100.0 35 ............................. GCCCGTCTAACTCTTTATCCATAGTCGCGAAGATG 822 29 100.0 36 ............................. CGTCTAAAAGATATGTTACAGCGTTACAGGCGTTAG 887 29 100.0 36 ............................. CGTCTAAAAGATATGTTACAGCGTTACAGGCGTTAG 952 29 100.0 64 ............................. CGTCTAAAAGATATGTTACAGCGTTACAGGCCGTAGTCGTTAACCCGAATATCGTTTTTACGTG 1045 29 100.0 37 ............................. CGCCTATCGTGTGTATTCTACCAGCGACAATTACGTG 1111 29 100.0 36 ............................. CGTCTAAAAGATATGTTACAGCGTTACAGGCGTTAG 1176 29 100.0 38 ............................. GATACAGCGCGATACGGTGGTTATCCGTGATACGGTAG 1243 29 100.0 37 ............................. AAAATACCGCTAAAATGGAAAAGGGCGAAAAGATACG 1309 29 100.0 37 ............................. CAAACTCCATCGTTTTTGCTTCCTTTCCTTTTGATGG 1375 29 100.0 37 ............................. ATGAAACGCGCTCTGATCTTGAGCGAGCATTTGAAGG 1441 29 100.0 37 ............................. AAGAATGAAACGACTTCTACATAAAGAATTGAGTTGG 1507 29 100.0 38 ............................. CCGATAAAGATTTCAGCCTTGCATAGTTGGCTACTCCG 1574 29 100.0 36 ............................. CAACAAAGATTTTCAAGCCTTAGACTTGAAGACCTG 1639 29 100.0 37 ............................. CAGGGAATGGGACTGGGGCCTGCTTGTGCCCATTCTG 1705 29 100.0 37 ............................. CAGGGAATGGGACTGGGGCCTGCTTGTGCCCATTCTG 1771 29 100.0 36 ............................. ACGAGCGCGATGAGACAACAGCGCAAGAAAAACTAG 1836 29 100.0 37 ............................. TTGCCCTTGAAAGGTTCAGAATTGTCCAGGAATTTCG 1902 29 100.0 36 ............................. GTGGTCTTTCAGAGCGTCTTCTTGCTTGTTGAGCTG 1967 29 100.0 36 ............................. CAAAAACGCTTTCACGTCTCTTTTTAATTCCTGTAG 2032 29 100.0 38 ............................. GATATTACATTCTCATTTACTCTAAAGAAGAAATTTAG 2099 29 100.0 38 ............................. ACAAGGACAATTCCCATCCTTAGTAAGCCCAGACTAAG 2166 29 100.0 38 ............................. TAGGAATTTAATAGCTTCAGTCTTTTCAGTCATCTTTG 2233 29 100.0 36 ............................. TGACTCGCGTTTCCGAGGGGAAAATATCCGCCGCCG 2298 29 100.0 37 ............................. CTTACGAGCGAAAAAACGCGAAAAAAAACTTTCATTG 2364 29 100.0 38 ............................. CAAAAGGCTCTAGTTTTAAGAAATCCATGAGAAAGTTG 2431 29 100.0 38 ............................. CGGCCTTAAGACACTAAAAAATAATCAAAGTGATGGGG 2498 29 100.0 37 ............................. TAACGAGACAACCGGCACTGCACGAATATTCATCTCG 2564 29 100.0 36 ............................. TCCCACTCTAACTCCCATAGAGATAATCTTATTTGG 2629 29 100.0 36 ............................. AGAACTTTATTTCTCCATTTACTTCTTCTAATGATG 2694 29 100.0 36 ............................. TCGTCTTTCTTAAGCTTCTCTTTAACCCGATTGAGG 2759 29 100.0 37 ............................. GCAGTAGGAGATTTATTAGGAATGGATAGCTCTACTG 2825 29 100.0 37 ............................. TTTTAAAATTTTTCTTTTCATTTTTATTCTTTTAGTG 2891 29 100.0 37 ............................. TCAAAGAAGAAGAGTTTGATAGAATTATTGTTTTCTG 2957 29 100.0 37 ............................. TCAAAGAAGAAGAGTTTGATAGAATTATTGTTTTCTG 3023 29 100.0 37 ............................. TCAAAGAAGAAGAGTTTGATAGAATTATTGTTTTCTG 3089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================ ================== 46 29 99.9 37 TTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATACAT # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //