Array 1 226349-227474 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRQ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain BCW_3972 NODE_2_length_352108_cov_4.88197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226349 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 226410 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 226471 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 226532 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 226593 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 226654 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 226715 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 226776 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 226837 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 226898 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 226959 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 227020 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 227081 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 227142 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 227203 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 227264 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 227325 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 227386 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 227447 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243733-245717 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRQ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain BCW_3972 NODE_2_length_352108_cov_4.88197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243733 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 243794 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 243855 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 243916 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 243978 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 244039 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 244100 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 244161 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 244222 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 244283 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 244344 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 244405 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 244466 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 244527 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 244589 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 244650 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 244712 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 244773 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 244834 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 244895 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 244956 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 245017 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 245078 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 245139 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 245200 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 245261 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 245322 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 245383 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 245444 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 245505 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 245566 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 245627 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 245688 29 89.7 0 A...........TC............... | A [245714] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //