Array 1 2618703-2613496 **** Predicted by CRISPRDetect 2.4 *** >NC_014652.1 Caldicellulosiruptor hydrothermalis 108, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2618702 29 100.0 37 ............................. TTTTCTCAACGTTTATGGTAACGTTGATTGATTTCTT 2618636 29 100.0 37 ............................. ATCTGTGCATACGAAACATAGCTTTGCTTAAATGCTA 2618570 29 100.0 38 ............................. GAGTATGTTAGCAAGAAGTTTGGTAAAGTTTTAGAAAG 2618503 29 100.0 36 ............................. ATAGCAGCTGTGATTAATGCTTACAGTCAGGCAATG 2618438 29 100.0 36 ............................. TGCAAAGCACGATAAAAGTCTGCCTATCTGCTGTTG 2618373 29 100.0 37 ............................. GTCCAAAGTCTGGGTATTTTCTTGCCAATCTGATACT 2618307 29 100.0 37 ............................. TTATTGTGCTTGCCCAATTTTTGATTCAGCTTCAGAA 2618241 29 100.0 37 ............................. ATTTTGTTGTTGGCTTGCAAGCCTAAAAGCTTTTTAA 2618175 29 100.0 37 ............................. TGTCCACTATTCGCTTAACCTTGTGCTCTTTCTGCTT 2618109 29 100.0 36 ............................. TGGGTTGTTTATCGCAAAGGAAGAAGAGCGGTAGAA 2618044 29 100.0 35 ............................. GTCTCATTTTCAGCTCCTAAATCATCAATGATTAA 2617980 29 100.0 37 ............................. GCATTAAAACTGCATCAGTTAGAGAGAATACACGATG 2617914 29 100.0 37 ............................. GCTTATGATGATACTTACATTGCAACAAGAAAATACT 2617848 29 100.0 36 ............................. GCTTCATAGAGTTTGGATTTGAATTGGACTTATTCT 2617783 29 100.0 36 ............................. GCTTCATAGAGTTTGGATTTGAATTGGACTTATTCT 2617718 29 100.0 37 ............................. TTAAGCATAAAATTGATTGTCTATGGGCTTTTATATG 2617652 29 100.0 35 ............................. TCTTTAAAGACTACTAATACTTTGTTTACATCAAG 2617588 29 100.0 36 ............................. AATTATTATATTGTCGTGTTAAACACTTTCTTTAAT 2617523 29 100.0 35 ............................. GGGACATGTCTCAGAATGTTGCAGAGAATGCATTC 2617459 29 100.0 37 ............................. AATGGAATTGCTTATGAAGAGTTCTTAGGATATGAGT 2617393 29 100.0 36 ............................. CACAAAAAGTGATATTGTGATAACTACAGCACATAC 2617328 29 100.0 37 ............................. TCTTAAGAAGCGAATTTGCTATTGATTCTTTTGAACA 2617262 29 100.0 35 ............................. TCTTCAAGCATAAACTGTTGTTGTTCTGGTGCTTG 2617198 29 100.0 36 ............................. GTATTTAATGATTAGCAAAGGAATGCCTATAACTGG 2617133 29 100.0 36 ............................. CTACAATCATCGTTGCTAAATCATCAGCTCTTGTTT 2617068 29 100.0 36 ............................. TCTCAGCTTCTTCTAGTTCTTGGAGCTCTTCTCGAA 2617003 29 100.0 37 ............................. GAAGTTCAAGATGTGCCAAGACTGACAAAAGATGAGT 2616937 29 100.0 36 ............................. CTCTGGAACGGACCGGGGACGGTAAAGGTGGTAATA 2616872 29 100.0 36 ............................. CTATGCTGTGCTTTGTATTGCTAAGCTATTGCTTCG 2616807 29 100.0 38 ............................. ATTATTGACTTGTTGCTGACTGGAGATTATGCAACAGA 2616740 29 100.0 40 ............................. TGAAAAGCAAAAAAACAGCTTGCAAACAAAAATAAACAGT 2616671 29 100.0 37 ............................. CAAAGCCACCTGCTCGTTCAAGTTTAAAACCACTTGT 2616605 29 100.0 37 ............................. TTGGTGGGGTAATAGTAACCTTTAAGCCAGAAGAAAT 2616539 29 100.0 36 ............................. AGCAGTTTCTTAAGTTCTTCTGCGTCCTGCCTGATT 2616474 29 100.0 35 ............................. TCTCAATTTCTTTAGCCTTTCACTAAAAGTTGCCA 2616410 29 100.0 37 ............................. AATTCTCCATTATGCTTGTCCTCCATATTCAGCCTGT 2616344 29 100.0 37 ............................. GTGCATATCTGCTGGTGATAAGCCCATTTCCTTCCAG 2616278 29 100.0 37 ............................. GACCTGTCTTTAAAGCCCGTAATGTTCAAACTCAAAA 2616212 29 100.0 36 ............................. GTGTTTAAAGGACCTCAACGAAGTAGGTGAGGCATT 2616147 29 100.0 36 ............................. GCGATTAGGAGCTGATGCTCGATGATGATAGACGGG 2616082 29 100.0 36 ............................. TATATTACATTCTTTTGTTACTTGGAAACAGGTGAA 2616017 29 100.0 36 ............................. ACAAAAGAAAGAGGAAATAGCTAAAAAAATCATAGA 2615952 29 100.0 38 ............................. TCAAGTGTATCTGCATTGGTCGCATTAGCAACAGCGCT 2615885 29 100.0 35 ............................. AAAAGATATCGTGCAGTTAGCATACTTGCTTTTGT 2615821 29 100.0 37 ............................. GCAAGCATAACGCTAAGCAAACTTAAAAGTATTGGAG 2615755 29 100.0 38 ............................. CAGCTAAAAGTTCTTCAAAGAAGTTTTTCTCACTCATC 2615688 29 100.0 36 ............................. TGCGTCGTAACAAACTTAAGTATTTCCTGCTCCATC 2615623 29 100.0 36 ............................. AGGGATTGGGAATGGATAGCAGAGCTTGATGAGAGA 2615558 29 100.0 37 ............................. ATACGAAATCAGCACCCCAGCTCAGCGCTGGAGTGCT 2615492 29 100.0 37 ............................. ATACGAAATCAGCACCCCAGCTCAGCGCTGGAGTGCT 2615426 29 100.0 36 ............................. TGCTGCAAATCCGCTTGTCTTTTCCCTCACTATCTC 2615361 29 100.0 37 ............................. GATTGTCAGAAAGACGTTCTTAATCGCATTCCAAACA 2615295 29 100.0 36 ............................. AGCTGTATCAACTGTCACAGTAAAAGTCGTTGTAGT 2615230 29 100.0 37 ............................. CTATCAAAAAACTTATTTTTCCAACCATCAATAATTT 2615164 29 100.0 37 ............................. TGGAACGAAAGGGCCTGGCACGCAGGTCCAACAGCTA 2615098 29 100.0 37 ............................. ATTTATCTCGTCTACAACACATATCATTCCCAGCTGC 2615032 29 100.0 37 ............................. TCATAATTTGTTAACAATTAGGGTGGTATTGACAAGA 2614966 29 100.0 36 ............................. AGCAAAAGCATTCAACTTTTTGATTGATGACGTTGA 2614901 29 100.0 37 ............................. AGATGTGTATTTATTAAGTGTTAGCAACTTGACTTTT 2614835 29 100.0 37 ............................. ACGGTGCAGTTATGCCGTACGTTGTCTTGGGAGAAGA 2614769 29 100.0 36 ............................. TCGTATCGCTTCTCTAAATCTTCAAGACTCTGTTTT 2614704 29 100.0 34 ............................. CTTCTTCCAGCACCAAAGCGACAATACTTCACCG 2614641 29 100.0 36 ............................. TTGAATCAATACTCAACAATCGGTTGGAAGGTTGAA 2614576 29 100.0 38 ............................. GATAATATTGTTGCAACTTTAAAGAAAGGATTTTTGGT 2614509 29 100.0 35 ............................. AAGAAAAACAAGAAATGGAAAAAATTGAGATTAGA 2614445 29 100.0 37 ............................. GTATTTGAGTTTTGGCATGTTTTCTGGCGAGAATTTT 2614379 29 100.0 36 ............................. CTTTAGCTTTCTGTAGATTTAATATCTTCTGGCCCA 2614314 29 100.0 38 ............................. TCAAAAGCAATTAACAAAATTATCACTCCTTAAGAAAG 2614247 29 100.0 37 ............................. TGGTGTTGTGGAATTAGTGGCTACTGACATTAACAAT 2614181 29 100.0 36 ............................. TCAATTAAGTTTGCAAAATATTTAATCTTGTTGAAA 2614116 29 100.0 36 ............................. GTATACAGGAAGTCTATGAAGGCGACGATATATTGC 2614051 29 100.0 35 ............................. CACATTCTCAAATCTTCTACGAGTCTTGCCTTACT 2613987 29 100.0 37 ............................. TTAGGGCGGGGAGAAGTCAATGGTAATTTAGTTTTGT 2613921 29 100.0 36 ............................. ACTAAAGTTATAAGAGACCCTGCTGACTCATCACAG 2613856 29 100.0 37 ............................. ACCGCTACCCCATGAGAATATGAGAAGTGCAGGACTT 2613790 29 100.0 37 ............................. GAGAGAAGAGTTTTTAAAAGACATACTTTTTAATTCT 2613724 29 100.0 38 ............................. GTGGTTAACAATGCTATCAACAACGTGAAGCAGGCCCA 2613657 29 96.6 37 ......A...................... CAGATAGCGATGATAGGAATAACAAGAAGTGCAGGCG 2613591 29 100.0 38 ............................. TCAATATCAACAATTCTTGTTCGAATGTATCCTGATAC 2613524 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 80 29 100.0 37 GTTTTATCTGAACTATTAGGGATGTAAAC # Left flank : AGTTTATAGACTCAGAAGGGATGTGATTTAAAATATACATTATTGTCACATATGATGTAAACGAAAAAAGAGTAAATAAAGTAAGAAAAATTTTAAAAAAATATTTTACATGGGTTCAAAATTCAGTTTTTGAAGGCGAAATTACTTTTGGAAAGCTTGAAAAATGCAAAAGAGAGCTTTTATCTGTGATAGAAAAGGAAGAAGATTCAGTATACTTCTATGAAATGGAATATAAACTGGTTTGCAACAAAAAAGTATTAGGGCAAGAAAAGAATTATGACTCAATAATTCTATAAATAACAAATATAACTATTTTGCAGCAAAGGGTATTTTTAATGTATTATTTAAATTACTTCTCGTTTCTGCATTTGCAAAACATATACCATTTTCAACCAATTCTCAACCATACCTTTGCTGCAAACTTTTATTTATTGCAATAAATTTGTAAATGCTTTATAATCTAATTATATCAATAAATGAGGTAATTTTTATTTTAGTGG # Right flank : ATTTATAAAGCATTCCTGTAATAAACGAAAATGAGTGAAAATGAGAGACTTGTCAAGAATTTTGTGTTTCCAATTTATAACGCAAGTTATAAAGTTGGGTTATGCTATTGATGCATTTTCTAATACTGGGAACTCCATTTTTCCATTTTGAACAGCGTAAGTTCTCTTCTTGTTGCGTAAATATTAATTTCTATGACTTTGGCAGTCTGAAAGTATTCACCTGAATTTACTTCTTTACTTTTCAATCATGCTGTTTACACGTAAGGCGGCGTCTGTGGAAAAGAATATGCTTTCTTAATTCCTCGGGGTATTTCATATGGGCAAGATAAAACTCTGCTTTTTCTGATATTGCAGCAATAAAATCGAGGATATTTTGAAAAATATTCATCACAAAGTTCTTTAAATTTCAATACAGCTTCATCAAAATCAGAAGAAGAGATTTTGATTTTGTCCAAACTCTTGTTAAAAGCTGAAGTATCCTCTTTTGTCATATGTTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATTAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 2686105-2687448 **** Predicted by CRISPRDetect 2.4 *** >NC_014652.1 Caldicellulosiruptor hydrothermalis 108, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2686105 30 100.0 36 .............................. AAAAACTTTGTGGAAAACTAAGTATTTACAAAAGTG 2686171 30 100.0 35 .............................. CACATCGAAAATGCGGGTAATATTTTTATACTACC 2686236 30 100.0 37 .............................. AGAATCGAAGTCATGAAACTTGCAGCTTTGTTTCCTA 2686303 30 100.0 37 .............................. CACTTGCTACAGCACTTGTTATGTCACTGCCTGCATG 2686370 30 100.0 32 .............................. ATGCATATCCCTCTCCGAGCACCCAATTATTA 2686432 30 100.0 36 .............................. ACGTTGCAAAGCGGTATAGGGGACATGGGCTTGAAT 2686498 30 100.0 34 .............................. AAATTATAAATGCTATGGGCCAAATTAAGGTAAG 2686562 30 100.0 36 .............................. ATGTTAACTCAATGTATCCTTTTGTTATGAGAAATA 2686628 30 100.0 34 .............................. TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA 2686692 30 100.0 34 .............................. TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA 2686756 30 100.0 36 .............................. TATAATCTTAGTTTTATCTTCTAATGTTTGTGCTTG 2686822 30 100.0 36 .............................. TAATATCTGATTTGGAGACTATTACCTTCTCTTTGG 2686888 30 100.0 36 .............................. TTACACCATTATCGTTAATTACTAACTCATAAGTTT 2686954 30 100.0 36 .............................. CTATTTTACTCGGTATTAATTTTCACCATTTTACTC 2687020 30 100.0 36 .............................. TCTAGACGAAAATATTGAAGCTATTGTAGAATATGA 2687086 30 100.0 37 .............................. TTACGCAATGAGAGTTCAAACCATCAAGACTATGACT 2687153 30 96.7 35 .............................T ACCCTTCGTCAAAATTATTGATTTTTTTCAATTCA 2687218 30 100.0 37 .............................. GGGTAGGGGCCCCAAACGAGCCCTTTGGGCGAGCTTG 2687285 30 96.7 35 .C............................ ATCAATATGTTTAGTTGTCGTTAGAAAAGGCGGTG 2687350 30 100.0 39 .............................. TTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTG 2687419 30 83.3 0 ...........A.......AA....A...A | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.9 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAGAACATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCAAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGACGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAAATTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGAGTATAATAGAAATAACATACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGTAAGATTTCTCAAGCCATCTACGG # Right flank : AAATGAAACTGTGAGACCGCTTTTGTGGTATAATTAAATTGGACAAAAAATAAAACAAACTCAGCATCTTTGGCTGCAGAGTGTAGAATTTTATTCTGAAAAATTCATAAGTCGGAGTGAAATTGCCTTGAGCTCTGAAATTCCACCAATGGAGCATGATACCACTTTTAAGTTCTTGCTCAAAGACAAAAAAGAGCTACTTGTGCTTGTAAAAGACATTCTCAGATACAGCTGGGCAGATGAAATAGATGAGGAGTCTATAGAATTTGATGACAGCGAATTTGTAACACAGCAGCTATCCCAGCTCAGAGCCGATATTGTTGCAAAAGCAAAGCTAAAAGGAAGAGAAGTATATTTTTATATCCTGATAGAGAACCAGTCGACAGTGAAAAGGGATATGGCACAGAAGATACTGAAGTACATGGTAAGCCTGTGGTGGAAGGAACTTAGCAAAGGGGCAGAGAACCTTCCGCCTGTTATACCCATAGTTGTGTACAACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 2705174-2705532 **** Predicted by CRISPRDetect 2.4 *** >NC_014652.1 Caldicellulosiruptor hydrothermalis 108, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2705174 30 100.0 36 .............................. AAAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCA 2705240 30 100.0 36 .............................. TAGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTT 2705306 30 100.0 35 .............................. AACATTAATGAAGGTAATATAGAAATAGCTTTTGA 2705371 30 100.0 36 .............................. AAAATACTATAGCAGAGCTCAGGCGATTGAAAGCTA 2705437 30 100.0 36 .............................. ACTTTTCACTTGCTCTTTCATATAATCTAATACAGT 2705503 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : ACTAACTTTAAAGTTAATAACTTTGAAGTCAATAAATATTATAACACAGTTTTAGTTAGATTTCTATTGTGTTTTTGATTTTTCTGAAGTTCACGCCATCTTATGCTAAATTTAATTCTTCTTTGTAGCTTGGATTAATTATTCTTCAGCTATATTCTCTTTTTTATCCTTATCCAAATCTATCGGATGCATGTGTTTCAAATTAAAAAAGGAGCGAAATGAAATATTATTTACATCTACTCCTGTATATTGTATTTTTGTTTATACATTTTATTCCATATATTTGCATGTACTTTGAAATATAAGGCATAATTTAGCTTTTGTATTTACCAATTGTTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGAAGTTTTTGGCATCCCTTGACTTTCAAAAGCTTTAGGGGTATAATAGAAATAACCTACAGCAGTTTGAAAACTTAACCATTTGTTCCTTGTGATATTTTTCAAGCCATCTACGG # Right flank : CATATGCTAAAACGTGCCAGACTTGTTTTCAGAGCGCTGATGGCTGCAAAGAGATACTTTAGAATAATCCCTGCTAAAAGAGGTCTGTGCCTGGTCTACAGATTCTCCATTTTATCCACTGTCTCAAATCCTGAACTTCCCGTAGATATAAACCAGCCAACAGAAATAATTGAATATGAAGGTGTGAAGTGGTCCGTTGAAGAATTTGTTTCGCTTGTTGTCATCGGTGAAGTTGATGTGAACAGAATAAAATCAGTAGTCGAAAAATTTGAAAACAATTGGAAGAGGAAATACCCGAAATTAAGAGATAGAGAAATTCAAAAGTATATAAACAAAATAAAGGATGAAGATTTGGAAGAAATGAGGAAGATTTGGGATGCTTTTGTAAATGCTGTAAATGGACAATAAACTCTCCTCAAGAGCAAACCAAGATAAAAAAGCCACGCAGAGAACAAAGAAGATTTTTCGTCTCTGCCGTGGCTTAATTCTTACATAAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 4 2725708-2722390 **** Predicted by CRISPRDetect 2.4 *** >NC_014652.1 Caldicellulosiruptor hydrothermalis 108, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2725707 29 100.0 36 ............................. ATATGCTGTGTTGTAAGCTTGTTTGAAGTGTTCCCA 2725642 29 100.0 36 ............................. CAGGCTTTTTAAGATTATAATTTGTTGTGTATTTCA 2725577 29 100.0 37 ............................. TGACACATTGTTACAGCGACACGGCACCATCGGCGGC 2725511 29 100.0 37 ............................. TTGAATTTTAGATTTGGATTAATTATATTCATTTCCG 2725445 29 100.0 36 ............................. TGATAAAATTAATATCCTGATTAGTAGTACCAAGCA 2725380 29 100.0 36 ............................. TAGCATTGACTGGACACCTTTAAACAGAGCTGGTAT 2725315 29 100.0 38 ............................. AAAAAGCTGCAGATGCTTTAGGTATTCAATTTTCAGCG 2725248 29 100.0 38 ............................. ACCAAATACGCAACATCAAACGGCAGTGAAAAAGGAAA 2725181 29 100.0 39 ............................. TCAAAGAAATTCAAACATACAAGTACAGAGAAGACAAAG 2725113 29 100.0 38 ............................. ATCAACTGTTTCTTGTATGCCCTTCACTTCAATTTTTA 2725046 29 100.0 35 ............................. GCGGTGTATATCATATATTGTTGCGCTACTTGCGT 2724982 29 100.0 37 ............................. CGCTTCGAAACAGGCAAATTTGGCAAAGCAATCATGG 2724916 29 100.0 37 ............................. AAAGGTTCTACTGCGTCATGTTTAACATCAAAAGGCA 2724850 29 100.0 36 ............................. CTGCTTTTTTAAACACAGTTTCGATTTCTGTCCTGT 2724785 29 100.0 38 ............................. GCTTTGCCCCCATTCTTATGTCAATAAAGTATTTATAA 2724718 29 100.0 37 ............................. TATTTGTTAACTTTTCAACTGCTTTCTTTATTTCTTT 2724652 29 100.0 37 ............................. GATGACATCAAGATAAAACTTGCGAACTTCTTTGGAG 2724586 29 100.0 36 ............................. AACATTGAAGTGTTGTTTAAAAGTCTTGGTGCGTCT 2724521 29 100.0 37 ............................. TGTTCAGAAGTGAGCGCTAAAACAGCGTTTAATCCTT 2724455 29 100.0 36 ............................. CTACTTAGTTCAGCAATGCTTTCTTCTTTGATTTGG 2724390 29 100.0 36 ............................. GAGTAGTGTCATCGCCAATCGCATTTGCAGCGTAGA 2724325 29 100.0 38 ............................. AAAGATATAAAGCTATGTTTTCATAGTCATCGTCCGTG 2724258 29 100.0 38 ............................. AAGTTTACAGAAGCTGAATTCCTTTTAGATGCTGAAGT 2724191 29 100.0 38 ............................. ATTACAATTTATATCTCACAAATATACAAATTGTTTTA 2724124 29 100.0 36 ............................. GCGGGCTTATTTTTTTATGTCATTTTGCCTCACCTC 2724059 29 100.0 36 ............................. AGTAGCGAACTTGAAAGGCTGCAACGATATGAACAG 2723994 29 100.0 37 ............................. TTAGAAAAATTGTAACTGTCTATAGTTAATGTAATAT 2723928 29 100.0 36 ............................. TTTCAAAGCTTTATATTCTGTTCTGCTTATTTCTAT 2723863 29 100.0 37 ............................. GACGGGACGTTAAACCGCAACGGCATTCATGCAGCAG 2723797 29 100.0 37 ............................. TGATTGAATTTCACTCCTTGTTTTAACTTGTTTATCA 2723731 29 100.0 35 ............................. ATCAGTATATAACATGATTAAAGACGGCAGACTTA 2723667 29 100.0 37 ............................. ACAGGGAAAAAGTTATAAGTAATCACATACTCTTCTC 2723601 29 100.0 37 ............................. TAATACTTCATAATTAGCTGTCCATGTTCTTAATTGA 2723535 29 100.0 36 ............................. AAATCTGTGTAGCTGAGCTGCATATCGCAAAGTCTG 2723470 29 100.0 38 ............................. GCCCTATTGCTTTAGTTCCTGCTTTTCTGTAGACTCCA 2723403 29 100.0 37 ............................. TGATTTGTTGTATTTATAAGCTCAAGCACAGGCATTG 2723337 29 100.0 35 ............................. CAAATCTATTTATTGCTCTTGCTAATACATGCGCA 2723273 29 100.0 37 ............................. GTATGTTCCATCCATCCATGAAGGCTAAGATGGATGA 2723207 29 100.0 37 ............................. TGCATTGTTTTGACCAGTTCTGAGTGATACAAGGCTA 2723141 29 100.0 36 ............................. ATAACCGCACCGCTTGCTGGAACAACTTTCGCCAAA 2723076 29 100.0 36 ............................. TGTATCAGTCCAGTGATTGCCTGTGCGACTGCTATG 2723011 29 100.0 38 ............................. GACATCATACAGCTTTACCTCTCCGTTTTCAGTTAGCA 2722944 29 100.0 37 ............................. GCAGCACAAGCTATTCCAATTCTCATAGAAGGCATGG 2722878 29 100.0 37 ............................. TGTAAAATTTGATTTCTGCACCTTCTGGTAGTGTTGT 2722812 29 100.0 35 ............................. CAGTTGCTGACATTTGAGTTTGTTGTTGATGACGA 2722748 29 96.6 37 .....G....................... GTGGCTATTAGACAAAGGATTTATTTACAGAGACAAA 2722682 29 100.0 37 ............................. AACGGTGAGGTCTTGAGAATACCTGCAGAGGACGTAA 2722616 29 100.0 37 ............................. TTTTTGTCGACGTTTACCGTTCTCATCTCTGCCAACG 2722550 29 100.0 38 ............................. GCAGTGCTTGCAGTCTATGCATAGCTTCACAACTACCA 2722483 29 100.0 36 ............................. GAAGATACGGTTGCTTATCGTTTGAAAAGACTTAGG 2722418 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 51 29 99.9 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : GTCTTAATTCTTTTATCCAGCATTTAATTTCATATGCTTTAGGATGTAGAGATAATGATTTGCTGAGAATGTCGAAGCATCTTTACATTGTTCCCACTGTAATCTCAGAGGACTTGAAAATTTCAGAAGATACCGGAGTGAGAAAGACAAAAACATAGAAAGCGGAGCGCACTGTGCTCCGCTTCTGCATTTATGAGGAAAATAAATTTATGTTTATGCGTTAGTTTTAAAATTAGCTTATGAAACATCTGAAAGAATATAACAAATACCACCATATTAAACATTATATATCTTTATTTTCATAACACACCATTTTGCAGCAAGGTTAAGAACAACTATAGTATTTCAAAAAAGCTAATATAACTGGAACGTACAGTTGTTTAGAATAATTTGCCAAATCGCAACCACCCCTTTGCTGCAAAACTTAATATTGACAGAGATTTCGAAATTTAATAAAATCATAGTAAAGATAAAGCCTTTCAGTTATTAAAATTTGGTGG # Right flank : TAAAATATTATCTTAACCCTTTACAGAACTATCAAAACTATTTAATGGGGATAAAAATGCTCAAGGTAAGAATATTACTAAATAAATCCATTAAATAGCAGAACAACTTTATTAGAATTTTATTTAACCAAAATATGAAAGGAAGTTTTTGATATGGGTAGAAAAGAAGTTACTGTGATATTTGAAACAATAACTCCTTTGTGGACAGGCGATGCTTGGATGAAGAGTAAAAAAATTAGACCATCTTCGTTATTGGGAAGTTTAAGATTTTGGTTTGAGGTAATTTGTTATTTTGGGGGAGTAGTTAAAAAAGAAGATTTCGATTTTAGTAAGGGAAGATTTGAAAAAGAAATTGGGCAAAAAGAACAAGGAAAATTGAAAGATAAGCTTAATGCTCTGGGTTGTGGCTTTGAACAATTAACATATGTTTTAAAAGATTTAGATATATGTATACCTTCAATAATTTTTGGCACTACAGGATGGAAAAGTTTGATTCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2733415-2733968 **** Predicted by CRISPRDetect 2.4 *** >NC_014652.1 Caldicellulosiruptor hydrothermalis 108, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2733415 30 100.0 36 .............................. TTCAATATGGTTTTTAAAAAAATTTTATATTTTCGG 2733481 30 100.0 36 .............................. TGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTG 2733547 30 100.0 36 .............................. ATAGAAAGACAATGCAAGTTATGAATACAGAAGTCA 2733613 30 100.0 36 .............................. TCCATTTGTAGCACCTCACTTGTTACAATTTGTAAA 2733679 30 100.0 35 .............................. CAGAATGCCACTTAACATTATCCTTGTCCCAGAAA 2733744 30 100.0 36 .............................. TCATCATAGATTTTTACTCTGTTTATCATGTTTTCC 2733810 30 100.0 35 .............................. CAAGGATTTAACGTATTTGATAATTCTATTCGTAA 2733875 30 96.7 34 .............................G AAAGACGCACCCTCAGGCAACTCTGTAGCACCTG 2733939 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : GAAGCTGAGGTGGAAGATTTACAATTTCTTCAATCTTTAAAGCTTCTCTTGCTTCTTTTTCTTGTTCTTGAGAAAGTTGGTGGTTGAAAATTAAAAACAGTTTGTTCAAGTCTGTCACATCCCTTTTTAAGTTTTCTTAACGATTGAAATTCTATGATTTTATAATACAACAATTTGTTAAATTATAAACATCAAAAAACTTGCGATGTAATATTTTTATTAGTTTATCATTCTATATTTTACTGCATATACCTATTATGTAATGTTATTTTATTGCATTTATGCTATTGTACTTTGATAATTGTACATCTTATTGACTTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAAATTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGAGTATAATAGAAATAACCTACAGTAGCTTGAAAACTTAACCATTTGTTCCTTGTAAGATTTCTCAAGCCATCTACGG # Right flank : TGGTAAGAGGGAACCTCCCCATAGGAGATATTGAAAAAGTGAGAGATAGTCTTTTTTGGGAGAATTGAAATGCAAAAGAATATTTTTAATGTTTGAAGATTTACAGAAATGGATGAGTTTTTATAGTCTTTTTATGTAGTTAAGAAGAGAAAATATATTATTTATTTTTGAAAAGTATAGCAAGAACAAGAAAATAGAATAGATTGTCGCTTTTAAAATCAAAAAAGCTGCAACCGTTTTGGCTGCAGCTTTTGAAGTCTTTTACTTTTCTTCAAAATCGTCGAACAGGTCTGAGATGTCAAACTTTTCTGTGTCCTCTTCCTCAAAAAAGGTGTCAATCTCGTTTTTCTCTTCATATTCTATGTTATAGTATTCACACATAAAATCTGCAACAGCAATGTTCAGGTCAAGCTCGCCTATCTGGTCTGATATTGAAAATGGGTCAAGCCTTTTCCATATGGTCTTGATATCCTTTTCCTTTTCAAGATGTTCAATGAAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //