Array 1 5026-2323 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCH01000003.1 Rhodococcus subtropicus strain C9-28 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5025 35 77.8 36 AG.A..............A-.ACC............ GAGCGAGGAACGGGATATTGCGGGCGTGAAGCAGCC 4954 36 100.0 35 .................................... TCCCGGCGTCGCGGGTACGCCTGCCAGAACTCATC 4883 36 100.0 35 .................................... ATGTTCTTGAGCAGGTTCCAGGGGGCGTCCTTGCC 4812 36 100.0 34 .................................... CCGCACCTCCCCACGCCTGCCTCAGCAACTCCGT 4742 36 100.0 37 .................................... CGGACGGGGTTGAGGCTCACGTCTCCCTCGACGAGGT 4669 36 100.0 35 .................................... CCGTCGTTGCGGTATGCGACCGCGAAGCCACAGAA 4598 36 100.0 36 .................................... CCGGGCGAGTTCATGCGCGCAGTCCAGGACTCCCTC 4526 36 100.0 36 .................................... GTCGCCCTCGTGACCCGGCGCCCGCAACGGTGCGGG 4454 36 100.0 37 .................................... GCCACGGGCGGCGGCGGCCAGGTTCGAGGGGGGTCGA 4381 36 100.0 35 .................................... GGGTCCGCGGCGAGTTCCCGCACGTCCCAGCGGTC 4310 36 100.0 35 .................................... ATGTTCGCGGACGGGTAGTAGGTGTTGTTGCTCGT 4239 36 100.0 36 .................................... GGCACAATCCCCTTCGCGCTCAACGCGTTACACAGG 4167 36 100.0 38 .................................... GGCGTTGCTACATCTGCCAGAGGGCGAACGGTGCAACG 4093 36 97.2 36 ....................A............... CGAGATCAGCCCGCGGCCACCCCGTCGACGGCTTCT 4021 36 100.0 35 .................................... CGCCGCTACATCGAGGCCAACCCGCAGGCCGTCTC 3950 36 100.0 36 .................................... CGCGGCCTGCACCATCTGGCAGAACACGTCGTACGG 3878 36 100.0 37 .................................... CTTTCCAGGCTCAGGACCGCAAGAAGGTCGTCCGAAA 3805 36 100.0 36 .................................... CAGCTTGCGGAGGGCGGGCCGCCACGCCTTGTTGTG 3733 36 100.0 37 .................................... CGGTGAGGTCCACGGCCCCGTCGCGGGTGAACACGCC 3660 36 100.0 34 .................................... CCGTCACCGACTGCGACGGGCCCTCACTGAGAGC 3590 36 100.0 36 .................................... AGGTACCCGTGTGACTCATTCCGCTGCCCCCTCGAG 3518 36 100.0 38 .................................... ATGTTCGACCAGGGTGGAACGACGAGGAGGAACGATGG 3444 36 100.0 36 .................................... CACGGCACGGACTACCGAGCCGCGCAGGGCGCCGCC 3372 36 100.0 38 .................................... CCCCTCCGGATCGGGCCGGGAGGGAATCGGGGGCCAGA 3298 36 100.0 36 .................................... GCCGTCGACCTTCGTGCTGAACGAGGGTGTGATCGC 3226 36 100.0 37 .................................... CCCGCGTCGACGACGCCCTCGAGTCCTCCCTCGGCCG 3153 36 100.0 36 .................................... CCGCAGCCCGGACAGCGGGCGCGGCCCGCCGAAGTC 3081 36 100.0 35 .................................... GGCCGCGAGCGGCTGGCCGGATACCTGGGCATGAC 3010 36 100.0 35 .................................... GAGAACGCGATCAAGAGCGCGACCAGCCGGATCGA 2939 36 100.0 39 .................................... CCGGTCAGGATCTCGCGTACACGGCTGATGGAGAGTGGG 2864 36 100.0 36 .................................... CAGGGATGATATTGGACAGATCTGTCCAAGTGCAAG 2792 36 100.0 36 .................................... AGCGGCCATCGGACGGCCCCCTCCTGTGAGCGAAGC 2720 36 100.0 40 .................................... GGTCGTCATCGTGGCGGACGGCCACCCACGGATGGTTCTC 2644 36 100.0 35 .................................... TCCGCATCCGACAGCATCGACTCGGCGCACTCGTG 2573 36 100.0 35 .................................... CTGAGACGCCCGGACGACGTAAGCGCACGGCCCGC 2502 36 100.0 36 .................................... CTCGGCGGCCGGCAGGCCGTCGTCGATCCCGGAGGA 2430 36 100.0 36 .................................... ACGTTCGGCCTTGGTTGCGCTCGCTGCGGCCTTCTT 2358 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 38 36 99.3 36 GCCTCAATGAGGCCGTGCCGCTTGGGCACGGACGAG # Left flank : TATCGGGCGGTGACAGCGTTGAGGCCGGACGTCTCCCCCGGCGCCGGGTATGAACTGTTGGCGCGGGTACTCGCGGAGCATTGGTCGGGGCCGGCCGACGCCGATCCGACGCAACGCGCAGAAGCGGCCGGGGCGGCGTGGGCCGCGGAGAATCTGGCGGACGGGGTGGACGGCGATCCTGCCGTGGTCGTCGCGGCATTGTTTGCCGAAATGGGGTTCTCGCCCGTACTCGAATCGAGCGCTGACGACGCACGCATCGTGCTGCACGCCTGCCCGTTCGAAGCGGTAGCACGAGCGAATCCGACAGTCGTGTGCGCTCTGCACCGCGGTCTTGTCCGCGGGGCACTCGACAAGCTCGGCGCCGGCGACACCGACAGTCGGCTGATCGCGTGGGACACGGAGCGGACGTGCGTGGTGGAGCTGATGCGGGTGAATCATCACACGCCACCGATGCCGGGATCCGCCAAGCGCTCTACCCGGATTCATGATCGGGGTGAACG # Right flank : AGCTCCCGAAATTTGGGGTGTTTGACCTGCAGAAACAGGCCCTCTCGCGAGAGGCATCCGATACACAGTGTCACATGCATCCGAGATTTCACTATCGACTTGTCAATGTGCGTGCTGAGCTGGGCGCGAGCGGTCCCCAGGGATTCCGTACCGCACGGACCGCTCGCGTTCATACGATCACGGCCCCGGATGGCGGCATGAGCCTCGGGACACCGATGGTTTCGATGGTGGTAGCCCCTTCGACTGCACCGAGGTTGACGTGCACTACGGAGTCCATGCCCAAATCCATCTGGGAGTGAATCTCGGCCCGCCAGCGCGCAAACTCGATGCCCGACAGGTCGCACAGGAACACCGAGTACTGGATCCGAACCCCGTAGGCCTCCATAACCTTGCAGACTCGCCTGAGCCGCTTCGGATCCCGGATGTCGTACGCGATCAGGTACCGTCGCCGCGCCATCTCGTCACCTCGTCGTCATCGGTACGTACTGGTCGATCTCGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAGGCCGTGCCGCTTGGGCACGGACGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //