Array 1 86263-87513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYA010000003.1 Escherichia coli strain 1537H contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86263 29 100.0 32 ............................. CGGCGCTCCTTGGTGCTACAGGCACTCTCCCC 86324 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86385 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86446 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 86507 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 86568 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 86629 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 86690 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 86751 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 86812 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 86874 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 86935 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 86996 29 100.0 32 ............................. TGGCAGTGGCTTTGTTTTTTGCTCTGATATAT 87057 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 87118 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 87179 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 87241 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 87302 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 87363 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 87424 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 87485 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113062-114005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYA010000003.1 Escherichia coli strain 1537H contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113062 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 113123 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 113184 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 113245 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 113306 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113367 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 113428 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 113489 29 96.6 32 ...........................T. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 113550 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 113611 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 113672 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCCGGTTTTTATGCA 113733 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 113794 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 113855 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 113916 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 113977 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //