Array 1 3934-5025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZA01000031.1 Neisseria meningitidis strain MRSN431103 MRSN431103_contig00031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3934 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 4000 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 4066 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 4132 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 4198 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 4264 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 4330 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 4396 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 4462 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 4528 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 4594 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 4660 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 4726 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 4792 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 4858 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 4924 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 4990 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //