Array 1 274-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000670.1 Sansalvadorimonas verongulae strain RKSG058 Contig_2856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 273 28 100.0 32 ............................ CAAGCAAGGCCGTTGATTGCGTACCTTATCCG 213 28 100.0 32 ............................ TTCACGTTGGCACCTTCCATGGCATCCAAGGA 153 28 100.0 37 ............................ TCCCGAATTATATCACATACCCACATGTCNNNNNNNN 88 28 92.9 32 NN.......................... AACAGTACCGGCCATGCGGATGTGGCCTGGGC 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 5 28 98.6 34 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTCTGTCAGGGTCGCGTTCACTGCCGGATAGGCAGCTTAGAAAACCGCAAAGAACGACGATGGCAGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGGATAGGCAGCTTAGAAACAGAACTCAACCTCGGCAACTTGCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGGATAGGCAGCTTAGAAATCCACAGATATCAGCGCAAACCCCCTGCTGCA # Right flank : A # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2403-618 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000670.1 Sansalvadorimonas verongulae strain RKSG058 Contig_2856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 2402 28 100.0 32 ............................ GACGTGTCTATAAATTCGCACGACTCGGAAAA 2342 28 100.0 33 ............................ AAAAGACAAGAACGGGCTGGAGATTGACATGTC 2281 28 100.0 32 ............................ AGCACAAAACGCAAGAGAAATAGAACAGCCCA 2221 28 100.0 32 ............................ TGGTAGACCGAGTTCAGAGGCGAGATATTGTT 2161 28 100.0 32 ............................ TACAAGAAAAATCACTGCCAGGAATGATGGGA 2101 28 100.0 32 ............................ TTGTCGCGACAGCCGGGGGGTTACTCGTTGGT 2041 28 100.0 32 ............................ AGATGAGTAGATTCTACGGACGAGCATTCGAA 1981 28 100.0 35 ............................ AAAATCGGGGAAAGTTATCGGCGCAACGNNNNNNN 1918 28 89.3 37 NNN......................... ACCGAGACCAGGGGATATTTCAGAACANNNNNNNNNN 1853 28 100.0 32 ............................ TAGTTCGGAACAGATTTCTTTGAATTGATCGA 1793 28 100.0 36 ............................ TTGTTCCAAATCTGAGCTCCCCACTCTGTNNNNNNN 1729 28 89.3 32 NNN......................... ACCGATACCACTTCCGGCGGAGCGACCGAGGT 1669 28 100.0 91 ............................ AGTCGGAGTTAGCAACGTTCAATTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1550 28 92.9 32 NN.......................... AGTCTGAAAGCGTGCGAAGTGGCGATGCGTAT 1490 28 100.0 32 ............................ TCCCCGCAGCGGGCCCGTGGGGCGCTGGTCTG 1430 28 100.0 32 ............................ AAGCCCGGTGCCAACACCGGCGACAAAGACAA 1370 28 100.0 32 ............................ ACAGCAACTCATAACACCCGCAAAGGCTAAAA 1310 28 100.0 32 ............................ TAATGAAACAGGTGCACCGCTCACAGGTGGGT 1250 28 100.0 35 ............................ ATACGATTCTTTCACCTGATAACCTGGAANNNNNN 1187 28 85.7 33 NNNN........................ CGTTATCGTTCAACCAACCGCTTAAACTTGTCC 1126 28 100.0 32 ............................ TCGATAGGCCATCCCAGCTGTATTCAGCCATC 1066 28 100.0 32 ............................ TACGACCACTGTAGTCCTCGGCGACGCAACAC 1006 28 100.0 32 ............................ ATTGTCGGTAACCGTTGCGTGACTGGTCGGGT 946 28 100.0 40 ............................ ACACCAACTGCCTACACCAAATAAACACATNNNNNNNNNN 878 28 100.0 32 ............................ TGTTGGAACCGGGAAATTACAGGCGACCCTGA 818 28 100.0 32 ............................ AAAATAATTGCGGTACAGTCTGTCAGGGTCGC 758 28 100.0 85 ............................ ACCGCAAAGAACGACGATGGCAGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 645 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================================================================== ================== 28 28 98.5 37 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGCGTCTTTAAGTTCACTGCCGGATAGGCAGCTTAGAAAAGCTGGCCTTCGTTGATACCACTGCCCGCACCGTTCACTGCCGGATAGGCAGCTTAGAAAATTGAACGGACGCTCCACATACTCAGTGATTAGTTCACTGCCGGATAGGCAGCTTAGAAATGATACTAATGATTGGCTGTTTTACCATGAGTGTTCACTGCCGGATAGGCAGCTTAGAAACTGTCAGAGCTGCGTAAATCCCAACAGCTCCGGTTCACTGCCGGATAGGCAGCTTAGAAATTCCAGAGTCGGGTTAGGTTACCCATTGCGGTGTTCACTGCCGGATAGGCAGCTTAGAAAAAACAGGGTGAATCACACTGGAGAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGGATAGGCAGCTTAGAAAATCAAAAGGGCACTCCGTTGGTGTTTACTGTG # Right flank : CAGAACTCAACCTCGGCAACTTGCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGGATAGGCAGCTTAGAAATCCACAGATATCAGCGCAAACCCCCTGCTGCAGTTCACTGCCGGATAGGCAGCTTAGAAACAAGCAAGGCCGTTGATTGCGTACCTTATCCGGTTCACTGCCGGATAGGCAGCTTAGAAATTCACGTTGGCACCTTCCATGGCATCCAAGGAGTTCACTGCCGGATAGGCAGCTTAGAAATCCCGAAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3529-2563 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000670.1 Sansalvadorimonas verongulae strain RKSG058 Contig_2856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 3528 27 96.4 32 -........................... CTGAGGCTGTGGCTGCCCTCTTTGCGGCTGCT 3469 28 100.0 37 ............................ GAAAAGCCCACCGTGCTTTGACGAAGGTNNNNNNNNN 3404 28 96.4 32 N........................... ACCTACACCACCGCAGACAAGGTGGATGTGTA 3344 28 100.0 32 ............................ TGACACCCAGAAGGTTGCTGACGGGTTCCGGT 3284 28 100.0 32 ............................ CCGAGTGGGCAGACACATATGAGTACTACAGC 3224 28 100.0 58 ............................ TGAAGCCACAGGCATCACTGCGGAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3138 28 100.0 33 ............................ CACCTGGTACGAAGATTACGACGGCACCAACAC 3077 28 100.0 32 ............................ GTCAACAGTGCGCTGGAGTTTCAGGTTCTCTC 3017 28 100.0 39 ............................ TGCAACCAGGCGCTGATCTGCAGGCGCAGNNNNNNNNNN 2950 28 100.0 32 ............................ GTGTCTCACGTTGTCGCTGAGCGCGTCTTTAA 2890 28 100.0 32 ............................ AGCTGGCCTTCGTTGATACCACTGCCCGCACC 2830 28 100.0 32 ............................ ATTGAACGGACGCTCCACATACTCAGTGATTA 2770 28 100.0 32 ............................ TGATACTAATGATTGGCTGTTTTACCATGAGT 2710 28 100.0 32 ............................ CTGTCAGAGCTGCGTAAATCCCAACAGCTCCG 2650 28 100.0 32 ............................ TTCCAGAGTCGGGTTAGGTTACCCATTGCGGT 2590 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================== ================== 16 28 99.5 35 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : | # Right flank : AAACAGGGTGAATCACACTGGAGAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGGATAGGCAGCTTAGAAAATCAAAAGGGCACTCCGTTGGTGTTTACTGTGGTTCACTGCCGGATAGGCAGCTTAGAAAGACGTGTCTATAAATTCGCACGACTCGGAAAAGTTCACTGCCGGATAGGCAGCTTAGAAAAAAAGACAAGAACGGGCTGGAGATTGACATGTCGTTCACTGCCGGATAGGCAGCTTAGAAAAGCACAAAACGCAAGAGAAATAGAACAGCCCAGTTCACTGCCGGATAGGCAGCTTAGAAATGGTAGACCGAGTTCAGAGGCGAGATATTGTTGTTCACTGCCGGATAGGCAGCTTAGAAATACAAGAAAAATCACTGCCAGGAATGATGGGAGTTCACTGCCGGATAGGCAGCTTAGAAATTGTCGCGACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000633.1 Sansalvadorimonas verongulae strain RKSG058 Contig_2751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31 28 100.0 32 ............................ AACACTTGATGTGTACGGCATTGATAGTGTAA 91 28 100.0 32 ............................ TTTGCAACGTTATCCCTTGTGTCTGACGAATA 151 28 100.0 32 ............................ CGGATGCTCTCGGGACTGGCGTACAGTCAAAT 211 28 96.4 32 .........T.................. ATAGGGCACAGATCGGACGTGCCCTCTTTTTT 271 28 92.9 32 .........T........A......... GGTGAAAATTGATCACCTATTTCAGTTTCGAT 331 28 78.6 0 A..........CC.T.......G.A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 GTGAACCGCCATGTCGGCGGCTAAGAAG # Left flank : CCAGAGGTTCTACGCTCTGGCGGTGAACGAG # Right flank : GTGAAGGTAGGTATTGATACGGATGCGTCAGAATGCACTGTGAGACGGCTATCGCTTACTCCTTACTTAAATTTCTTCTTTCCCTTTCGGGTGTTCGGCAAGCCACTGCTTGTCTTCAGAGCTGAGATCGACCGGAAAACCAGCCAATTGTTTTCGTAAGCTAGTTTGTACTTTGGTACTATTCCTCTTCCTCAGGGTTAAATGAGCGTCTACGATCAAGCATTCAAGATCGTCACCAGGCTTTATATCCAGCTCCTTACATAACCAAACAGGAAGTGTTACTCGCATATCCTGACCTACCTTCATCACAATTCCCCTTATTTCACTAAGAAAAAGATAGACAGTCGCTATATTGCTGAGTTCCTTTCATATGCTTCACTTAAAACCGCATCAAACAAATTCACCAGCCTCAATTGTTCAACTCTATTCACAGATACCCGACCCAGTTCCGGGTTCCCAACAACAATAGCCATTGACTGGGCACGGGAGATGGCGACATT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCATGTCGGCGGCTAAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 2324-1570 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000653.1 Sansalvadorimonas verongulae strain RKSG058 Contig_3942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 2323 28 100.0 32 ............................ ATGTTGTAAGCATTCACGCCAACATGGTTCTG 2263 28 100.0 34 ............................ ATAGCGGGTGATGCGCCCGACTGGAACANNNNNN 2201 28 85.7 32 NNNN........................ CGTTATTCAGGGTTACCCATTGCCCGTATGCT 2141 28 100.0 32 ............................ ACTTTCTCTCGGTTACGCTGCCACCGGCCCAT 2081 28 100.0 32 ............................ ATGCGCTGGTGTACACGACAGATCAAGATGGA 2021 28 100.0 36 ............................ AATATGGTGTTTAGCTCAGCACGGAACGGNNNNNNN 1957 28 89.3 32 NNN......................... ATGCGGATATCAATCTGCCGTTGCAGGGTGGT 1897 28 100.0 32 ............................ AGCGTGCTTCGGATTATGAGTCCGACGATAAA 1837 28 100.0 32 ............................ CAATGCAACCGGCCTTAGTTCTTTTTTTCGTT 1777 28 100.0 32 ............................ TGCCTCAGTCAGAAAACCCAACTGGGATTCAA 1717 28 100.0 32 ............................ AATGCCGCTTAACGACAGCGCCGAACGCGCTC 1657 28 100.0 32 ............................ ATCTGGTACAGCCCCAGCGCAGGCCCTTTGAT 1597 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 13 28 98.1 33 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ACTAACTATCCTGTTTTTGTTGCCGCATAAGCAAGTTCACTGCCGGATAGGCAGCTTAGAGAGGCAGGCGCAAATCAATCTGGAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTGCCGGATAGGCAGCTTAGAAAACACAGTAAACGTACTCCCACCCTATTACGAA # Right flank : ACGTGCGAGCCCGCACCACTCCTGTGCCCGCCGCAGTCCTGGCGGCGTGTCGGAGGAGCAGGGCGGGCCTTTAAGGTCATCAGGCTCCGAGTTCAGCGGCAAGTGCTTTATTTCATGAGGTCATTACCTGAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1 28 100.0 32 ............................ TTTATTGAATGGCACGTACATGATAAAAGCGG 61 28 100.0 32 ............................ AGCCCGGAGCACCGTTCCGTGCTGAGTTGAAT 121 28 96.4 38 ...........................N NNNNNNNNNGTAGGGGAGCTGTCTGTCTTCTCTTTTAC 187 28 100.0 32 ............................ AAAAGTTGTGGGGCGATTACATTGGCTCGATT 247 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 99.3 34 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : | # Right flank : AATTATCGGAGTCCGTGTATGTTCCTGTGATTAGTTCACTGCCGGATAGGCAGCTTNNNNNNNNNNTCTTTCGCTTTCTGGAGAGCAGCAATGTATTTCTAAGCTGCCTATCCGGCAGTGANNNNNNNNNNCGTGCTTTGACGAAGGTCATGGAGCGTAATTTCTAAGCTGCCTATCCGGCAGTGAACGCCGAACGTGAGTCAAGACTCCGATCCCAAGATTTCTAAGCTGCCTATCCGGCAGTGANNNNNNNNNNTGTCCACCAGCACTGTGAATCAACTGTTTTTTCTAAGCTGCCTATCCGGCAGTNNNNNNNNNNTAAGATCAGCAACAGCAGAAATTTTAACCTGTTCACTGCCGGATAGGCAGCTTAGAAACGATGCAGGAATACCAAGCAAACATTTGGATAGTTCACTGCCGGATAGGCAGCTTAGAAATCTTTTTAGGATTCATAAGATCAATTTCTGCCGTTCACTGCCGGATAGGCAGCTTAGAAACTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 522-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 521 28 100.0 32 ............................ TCTTGGGATCGGAGTCTTGACTCACGTTCGGC 461 28 92.9 37 GT.......................... TTACGCTCCATGACCTTCGTCAAAGCACGNNNNNNNN 396 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 3 28 97.6 35 NNTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNTTCTAAGCTGCCTATCCGGCAGTGAACTTTCGTAGATGCCGATGGGTGTATCTCGTNNNNNNNNNNTAAGCTGCCTATCCGGCAGTGAACAGGTTGATAATAACCCCTTCCGAGTGTCCAATTTTCTAAGCTGCCTATCCGGCAGTGAACTTCATGGTTAGAACCTGTTGCAAAATTTCTTTTTTCTAAGCTGCCTATCCGGCAGTGAACTTATATTTAACAACCCTTTAGATATTCCACAGTTTCTAAGCTGCCTATCCGGCAGTGAACGGCAGAAATTGATCTTATGAATCCTAAAAAGATTTCTAAGCTGCCTATCCGGCAGTGAACTATCCAAATGTTTGCTTGGTATTCCTGCATCGTTTCTAAGCTGCCTATCCGGCAGTGAACAGGTTAAAATTTCTGCTGTTGCTGATCTTANNNNNNNNNNACTGCCGGATAGGCAGCTTAGAAAAAACAGTTGATTCACAGTGCTGGTGGACANNNNNNNN # Right flank : ATACATTGCTGCTCTCCAGAAAGCGAAAGANNNNNNNNNNAAGCTGCCTATCCGGCAGTGAACTAATCACAGGAACATACACGGACTCCGATAATTTTCTAAGCTGCCTATCCGGCAGTGAACAATCGAGCCAATGTAATCGCCCCACAACTTTTTTTCTAAGCTGCCTATCCGGCAGTGAACGTAAAAGAGAAGACAGACAGCTCCCCTACNNNNNNNNNNTTCTAAGCTGCCTATCCGGCAGTGAACATTCAACTCAGCACGGAACGGTGCTCCGGGCTTTTCTAAGCTGCCTATCCGGCAGTGAACCCGCTTTTATCATGTACGTGCCATTCAATAAATTTCTAAGCTGCCTATCCGGCAGTGAAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 623-890 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 623 28 100.0 32 ............................ CGATGCAGGAATACCAAGCAAACATTTGGATA 683 28 100.0 32 ............................ TCTTTTTAGGATTCATAAGATCAATTTCTGCC 743 28 100.0 32 ............................ CTGTGGAATATCTAAAGGGTTGTTAAATATAA 803 28 100.0 32 ............................ AAAGAAATTTTGCAACAGGTTCTAACCATGAA 863 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TCACTGCCGGATAGGCAGCTTAGAANNNNNNNNNNGTAGGGGAGCTGTCTGTCTTCTCTTTTACGTTCACTGCCGGATAGGCAGCTTAGAAAAAAAGTTGTGGGGCGATTACATTGGCTCGATTGTTCACTGCCGGATAGGCAGCTTAGAAAATTATCGGAGTCCGTGTATGTTCCTGTGATTAGTTCACTGCCGGATAGGCAGCTTNNNNNNNNNNTCTTTCGCTTTCTGGAGAGCAGCAATGTATTTCTAAGCTGCCTATCCGGCAGTGANNNNNNNNNNCGTGCTTTGACGAAGGTCATGGAGCGTAATTTCTAAGCTGCCTATCCGGCAGTGAACGCCGAACGTGAGTCAAGACTCCGATCCCAAGATTTCTAAGCTGCCTATCCGGCAGTGANNNNNNNNNNTGTCCACCAGCACTGTGAATCAACTGTTTTTTCTAAGCTGCCTATCCGGCAGTNNNNNNNNNNTAAGATCAGCAACAGCAGAAATTTTAACCT # Right flank : AATTGGACACTCGGAAGGGGTTATTATCAACCTGTTCACTGCCGGATAGGCAGCTTANNNNNNNNNNACGAGATACACCCATCGGCATCTACGAAAGTTCACTGCCGGATAGGCAGCTTAGAANNNNNNNNNNAAACTGAGAATTAGGATTACCCCACAGATTTTCTAAGCTGCCTATCCGGCAGTGAACGACGATCCAGATTTACTCAGTGAACCGGTGCCTTTCTAAGCTGCCTATCCGGCAGTGAACGTCCCCTGAGCGTTTAGTGTTGCGTCAGATAGTTTCTAAGCTGCCTATCCGGCAGTGAACAGACTCTCGACGACGCAACACTGAATGCTCAGTTTCTAAGCTGCCTATCCGGCAGTGNNNNNNNNNNGTAGAGTTTACTTTTTGCCTCATTAATCGTTCACTGCCGGATAGGCAGCTTAGAANNNNNNNNNNCTCGACAGTCCTGCCTGTAGCTCCGCATGTTCACTGCCGGATAGGCAGCTTAGAAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1200-1052 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1199 28 100.0 32 ............................ CTATCTGACGCAACACTAAACGCTCAGGGGAC 1139 28 100.0 32 ............................ GGCACCGGTTCACTGAGTAAATCTGGATCGTC 1079 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : NNNNNNTTCACTGCCGGATAGGCAGCTTAGAAAGACCAGCGTTGCGTCAGCGAGAGTCTCATNNNNNNNNNNTCTAAGCTGCCTATCCGGCAGTGAACACCGAACTCTGGTTTATTCTCCCATAATTTAATTTCTAAGCTGCCTATCCGGCAGTGAACATTTCTTTGGTTGTTTATGGGGTTTTNNNNNNNNNNTCTAAGCTGCCTATCCGGCAGTGAACAAGCTGCTGCGCCGTATGGGGAAAACCATGGTTTTCTAAGCTGCCTATCCGGCAGTGAACGGCGACAGATCGGGAACGCCTCGCGTCTGACTTTTCTAAGCTGCCTATCCGGCAGTGAACATGCGGAGCTACAGGCAGGACTGTCGAGNNNNNNNNNNTTCTAAGCTGCCTATCCGGCAGTGAACGATTAATGAGGCAAAAAGTAAACTCTACNNNNNNNNNNCACTGCCGGATAGGCAGCTTAGAAACTGAGCATTCAGTGTTGCGTCGTCGAGAGTCT # Right flank : ATCTGTGGGGTAATCCTAATTCTCAGTTTNNNNNNNNNNTTCTAAGCTGCCTATCCGGCAGTGAACTTTCGTAGATGCCGATGGGTGTATCTCGTNNNNNNNNNNTAAGCTGCCTATCCGGCAGTGAACAGGTTGATAATAACCCCTTCCGAGTGTCCAATTTTCTAAGCTGCCTATCCGGCAGTGAACTTCATGGTTAGAACCTGTTGCAAAATTTCTTTTTTCTAAGCTGCCTATCCGGCAGTGAACTTATATTTAACAACCCTTTAGATATTCCACAGTTTCTAAGCTGCCTATCCGGCAGTGAACGGCAGAAATTGATCTTATGAATCCTAAAAAGATTTCTAAGCTGCCTATCCGGCAGTGAACTATCCAAATGTTTGCTTGGTATTCCTGCATCGTTTCTAAGCTGCCTATCCGGCAGTGAACAGGTTAAAATTTCTGCTGTTGCTGATCTTANNNNNNNNNNACTGCCGGATAGGCAGCTTAGAAAAAACAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1295-1569 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1295 28 96.4 37 ...........................N NNNNNNNNNCTCGACAGTCCTGCCTGTAGCTCCGCAT 1360 28 100.0 32 ............................ AGTCAGACGCGAGGCGTTCCCGATCTGTCGCC 1420 28 100.0 32 ............................ ACCATGGTTTTCCCCATACGGCGCAGCAGCTT 1480 28 92.9 34 ..........................NN NNNNNNNNAAAACCCCATAAACAACCAAAGAAAT 1542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 5 28 97.9 34 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : AAATATAAGTTCACTGCCGGATAGGCAGCTTAGAAAAAAGAAATTTTGCAACAGGTTCTAACCATGAAGTTCACTGCCGGATAGGCAGCTTAGAAAATTGGACACTCGGAAGGGGTTATTATCAACCTGTTCACTGCCGGATAGGCAGCTTANNNNNNNNNNACGAGATACACCCATCGGCATCTACGAAAGTTCACTGCCGGATAGGCAGCTTAGAANNNNNNNNNNAAACTGAGAATTAGGATTACCCCACAGATTTTCTAAGCTGCCTATCCGGCAGTGAACGACGATCCAGATTTACTCAGTGAACCGGTGCCTTTCTAAGCTGCCTATCCGGCAGTGAACGTCCCCTGAGCGTTTAGTGTTGCGTCAGATAGTTTCTAAGCTGCCTATCCGGCAGTGAACAGACTCTCGACGACGCAACACTGAATGCTCAGTTTCTAAGCTGCCTATCCGGCAGTGNNNNNNNNNNGTAGAGTTTACTTTTTGCCTCATTAATC # Right flank : ATTAAATTATGGGAGAATAAACCAGAGTTCGGTGTTCACTGCCGGATAGGCAGCTTAGANNNNNNNNNNATGAGACTCTCGCTGACGCAACGCTGGTCTTTCTAAGCTGCCTATCCGGCAGTGAANNNNNNNNNNGGGCTGGAGCACGGCGATGACAGCTGGATTTTCTAAGCTGCCTATCCGGCAGTGAACCACGCCAGTCGTGAAAAACAGCCGATGACCATTTCTAAGCTGCCTATCCGGCAGTGAACAACACGGAACAGCCACTTTATTAAGTTCCAAGTTTCTAAGCTGCCTATCCGGCAGTGAACTCACTGATTCGGCGGGAACATATGTTGCCGATTTTCTAAGCTGCCTATCCGGCAGTGAACGAAGTGATCAATGTCGATTTGCACACGGTCGATTTCTAAGCTGCCTATCCGGCAGTGAACGCATATTTTGTGAACATCCCGGAGAATGCGGGCTTTCTAAGCTGCCTATCCGGCAGTGAACTCNNNNNN # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2694-2841 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMME01000694.1 Sansalvadorimonas verongulae strain RKSG058 Contig_4031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2694 28 96.4 32 ............G............... TACTTCTGTATCGTGATTCGCAAATACAACCT 2754 28 100.0 32 ............................ CGAGATTGATGTCGATTTCCGCGAGAAGTGCT 2814 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCATCGTTCACAAGATTCGTTGTAATTTTCTAAGCTGCCTATCCGGCAGTGAACCAGGTACACCAACGGTGATTGACCGTAATAACTTTCTAAGCTGCCTATCCGGCAGTGAACNNNNNNNNNNCCTCATCCCAAATGCACCCTTCCGCGTTGTTCACTGCCGGATAGGCAGCTTAGAAAATTAACGCAAACAGGCAATAACTGACTTTCCAGTTCACTGCCGGATAGGCTGCGTATTCTGGCCAACTTGAACAGTGATTNNNNNNNNNNGACCCGTTCCATCATGGACGTTGCCCGTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGCGTTGTGCATCAGCCTGTCCAGAATCGCATCGGCTAACGTCGCGTCACCAATGTGGTTATGCCATTCTGCGGTAGGCAGCTGACTGGTGACCAGCGTGGAGCTTTTTTCGTGCCGGTCGTCCATGACTTCCAGCAAGTCGTTGCGCTGCTGTTGTGTCAGGGGCTCCAGGCCCCAGTCATCCAGTATCAACAGATCGGTTTTCTCCAGCTGTCTCAGCAGCTTGGTGTAACTCCCA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //