Array 1 6937-6544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMC01000026.1 Lentilactobacillus hilgardii strain TMW 1828 Lactobacillus_hilgardii_TMW1828_seq26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6936 29 100.0 32 ............................. TCGATAATGAATCCTGCTCCCAAAGTGGATTG 6875 29 96.6 32 ............................C TAAGCGAACGAGATAAGGACTTAAAAGGATTG 6814 29 100.0 32 ............................. TAAAGTAATGAAATCCATCTTTGTTTGTCGAT 6753 29 96.6 32 ............................C TGCCAGGCATTTGCGTTGGCTACACCAGGCTG 6692 29 100.0 32 ............................. GCAGAGGCGATGCGATTAATATCATCGGCACT 6631 27 89.7 32 ................--..........C TGATCACGTGCAATCGGATCAAGGCCGGACGC 6572 29 89.7 0 ..............CA..........T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : GTATAGAAGATAAACTTTTAAATGTGATCAGTAGTGAAATAAGCTTCAACCACAGTCTCCTCAATGGGTCATGGGTTTAATATCATGTCTTGTTGGGGAGATTTTTTGCTTTGAGTTGACATTTTTTTGTCTAATGGATTTGATTACATTGAAAGAATTGCTGTCAATCAGACATTGCCTCAGCTGAATTTTATTAAAGTAAAGCAAAACGAGATTAACGTAAAAACATTCAAACTGGAATTAGCGTTCTAATGCTACAAGAAATGTCTAATTTATTATCAGACTTGGTCGTTTGAGTGGTTAGTCTTGATAAGTTGATGAATGACCATTAAAGATGTTGATGCTGGGCTGTTTATACTTATAGAAAATATCGAATTGTTTGAAATCCAACTTGAAATGAATTGTTTTTTAGGATAATTTAATAAGGGGACGTTTTCTAAACTTAATAAAAATGGTGTTGTTGGGATTTTAGAATGGCGGTATGACAGGGATCTTTTAGT # Right flank : CCTTACTATGCGATTATATACTTGAGGCTGATGTGAGAGGATCATCTGAATTAATAGGCATAAGAAATGATTAACAATTAATGGAGGCTGGGACAATAGTCAAAAAATCTATATTACAACTTTCTTATCCCAAAGTGAAAATCCCGTAAAATCAGCGCTTTGTAAACTGATTTTACGGGGCTTTTTAAAAAATAATACTTTTTCGACTTATGTCCCAGCCACTTCCTAGGATAAATCTAAAAAAGGACTGGGAATTTGTAGGACCAGTCTGTTTTGTTTGATTGATGCTACTTATTAAATTTTATGACTTTGAATTTTTTACCAAGGTTGGTTTCACTGAAGTGATTGGTAACATCTTCTGAGATTGAACATATCTAATTAAAAAGACGACCAACTACATAAAAATGTAATCAGCCGCCTCAAGTGCACTCCGAAAAGCAACACCGCAATTAGTAACCTTAGCGTATCAATTTCGGCACATATTGTAAACAACTTTGTTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87071-89019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMC01000006.1 Lentilactobacillus hilgardii strain TMW 1828 Lactobacillus_hilgardii_TMW1828_seq6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87071 36 100.0 30 .................................... CCATCAACAGCAATTGAACCGTCAGTCTTT 87137 36 100.0 30 .................................... CTTAGTTACTGATGGGAACCTTAGTGTTAA 87203 36 100.0 30 .................................... TTGCTAACTGCACAGTTGGTGTTGTTGTTG 87269 36 100.0 30 .................................... GACCACGATGCCAATAAAGCAACGCTTGCG 87335 36 97.2 30 ............................C....... TCATCAGCCGTGCTTTCTACCCGAATAATT 87401 36 100.0 30 .................................... CTTAAGCTTGAAGATTTCACACTCAAAATT 87467 36 100.0 30 .................................... AAGCACAATGTGGCTTATGGCAAAACAATT 87533 36 100.0 30 .................................... CGACATTAATAAGGTGTCGGAAAACAAAGA 87599 36 100.0 30 .................................... AAAAGTTTCTAAATCAATTGGCAGCAGTTA 87665 36 100.0 30 .................................... TTAATGTACGGCCAATTGGTATCGCTGCCA 87731 36 100.0 30 .................................... TTGATCGGTACCAGCATTCTAATGGCAACA 87797 36 100.0 30 .................................... CGCTTTCGGTCGCATTATCTCGGAATGATA 87863 36 100.0 30 .................................... CATTTTGTCGTTTTTTAATTCTGTCTGGGG 87929 36 100.0 30 .................................... AGATTTACGAGGGGCGACCTCGTTCAAGGT 87995 36 100.0 30 .................................... GCATCGCCGTTTTTATCAACCGGATCAACT 88061 36 100.0 30 .................................... TCTGATAATTGTGAAAGGGCGTTTCATCAA 88127 36 100.0 30 .................................... TAGATATTAAAGATACTAAACACAGAAGCC 88193 36 100.0 30 .................................... GAAAAGTTTGGAGGTACTAAATAATGGTTG 88259 36 100.0 30 .................................... CAAGAAATTACAAGCCATTCGCCGCAAACA 88325 36 100.0 30 .................................... TGTCATCTCAATGAACGTTTCTAAATTTAA 88391 36 100.0 30 .................................... CAAACAATGTCAACAAAATGACGGCAAATA 88457 36 100.0 30 .................................... ACACGTTAATGGCTTACGTTCTTAATTTGT 88523 36 100.0 30 .................................... ACAGGCATTAACATTTGTGTGGCGGATTTA 88589 36 100.0 30 .................................... GTTCATCGTCTTCTTTCAGCTCAATTACTG 88655 36 94.4 30 ...............................A.C.. TAATGAGATGTTTGGCAAGAAGGGAGGTCA 88721 36 94.4 30 ...............................A.C.. ATTCTATAGTCAAAACACCCCTCAAGAATC 88787 36 94.4 30 ...............................A.C.. ATATATTCAGGAGAAACATTAAGAGCTTTA 88853 36 94.4 30 ...............................A.C.. GGTTATACGATAAAAACGGTGACTTGGTTA 88919 35 91.7 30 ...................G........-....C.. ACCTATTGGTATTAAGTGAGACGTCACCGG 88984 36 77.8 0 ..........C..............CGC....CAAA | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 98.1 30 GCTTTAGTAGTAGTTCAAAACAATGATGTTTTATCC # Left flank : GGTGAGGAGATTGAACGACGCTATTTGAGTCGAATCACGAAGGCGTTTCTTGATGACTTAACCGATCCACAAAGAAATAAGATCCATGATTCGTTGAACAGACTTTACAATACGGTTCAGGAACAGCTGTACATGATCGATTTGCCCATTGAGGTCACCTATGATTTCGATTTGAAAGAACTCACAAGATTTGCAAAAATTCATTTTGATTCTGGTACTGCCAATAACCCGTGTGCTATGATTGAATCAATCCTTAAAGTGTATGAAGAATGTCATTTAAAGACGACTTTAATTTTTACCAATGTCAGACAATATCTTTCAATCGATCAATTGAGAGAGATAGAGGCGATGATTAAAGAGATAAGGGTGTCGGTTGTACTTATCGAATTCACAGAAATGGAGCATCAAGATTTCTATGGAAACGCTGATTTTTACTACATCGATGAAGACTTCGTTGATTGGCATAATGCTAACCATTAAATTATGATGATAATTTAACG # Right flank : AAGACTAGCGTCTTTCTTTAATAATAGTATTCTCAAGAAGCGTCATAGCGATTTTCCTTTTCATTAAACGTGGTGGATTATTAATGAAAAGGGAATACGTTATGGCGTTTTTTGGTTAGGTTCATTTAAAAATCCAACGATTCATTGTTTCTAAGGTATTTTTAAGTAAATTTCAACTATTCACTTTCCCTCACCATCTTAAATAGTTGCACCCGATTATTAATCCCCAACTTTCGATAAACATTCAAGATGTGTTTCTTCAGCGTATTGTTGGTGATATAAAGTTGGTCGCAAATTTCATCGTTGTCCATCCCATCCAGCAAACTTCGGGTAATAACTTGTTGCCGTTTGTCAAGGGCAGTTTAAAAATGTAGGTTTTCGGCAGAAAGAAATGTAGGTTTTCGGCAGTTACTTGAGGCCACGTAATCGGTAAGATTTACCAGTGATCTTCACTACGTGAACATGATGAACCAAGCGATCGAGAATGGCTGCTGTCACAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGTAGTAGTTCAAAACAATGATGTTTTATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //