Array 1 44664-43964 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMT01000015.1 Cronobacter malonaticus strain cro645B1 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44663 29 96.6 32 ....................A........ CAGGAACATATAGCCGGACGACCCTGCGAGGG 44602 29 96.6 32 ...........A................. CGCGCGCAATGGCTGCTTTTTAGCGTTTAGGA 44541 29 100.0 32 ............................. ACGTCGGGGTGCCAACGAAAGCCGGCGACTCA 44480 29 100.0 32 ............................. ACGTTTTTTTCGCTGAGCTCCTAGGTCATGAT 44419 29 100.0 32 ............................. AGCAGCCTCAGTCGCGCCAGCGGTGCGCCCGT 44358 29 96.6 32 ............................T CGACGCTGCAAACGCCGATCTATCAGCTATCG 44297 29 100.0 32 ............................. GGGCAGGACTCTTAATGCATTTTCTTTATCAC 44236 29 100.0 32 ............................. GCACGCCTGCTGCGTTACTGACGTACTCCTGA 44175 29 96.6 32 ............................A TAAGCAGGAGCCGCCAGCGGAGATGCAGGCGG 44114 29 100.0 32 ............................. TTGACCTGAGCGGTGAGCGTGGTAAACGTGCC 44053 29 100.0 32 ............................. AAAACGATACGAGCCAAAATCCTCGCCAGCAT 43992 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCGCTTCAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71818-70935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMT01000015.1 Cronobacter malonaticus strain cro645B1 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71817 29 100.0 32 ............................. ATATCGCCATTAATGGTGATGCCTCTATTAGC 71756 29 100.0 32 ............................. CGCGCTGTAACTGAACGTGCCGAGGTTAATTT 71695 29 100.0 32 ............................. CGCGCGCCAACTCCATGAGGGACATCCCGTTA 71634 29 100.0 32 ............................. ACGAGTCGTTCACAGGCGAGTTCATCAGCGTA 71573 29 100.0 32 ............................. TGTTTTCAGGTTTGTCATTCGTTGATCCTTTG 71512 29 96.6 32 ............A................ CCGCAGGTAACCAGCGGCGACTGGCAAAACTT 71451 29 96.6 32 ............A................ CGAGAGAATTTAAAACCCCCACCACCGACGCA 71390 29 100.0 32 ............................. TTCGTGTCGGTGCCGTTATCCGGGGTGAAAAC 71329 29 100.0 32 ............................. GCGTTGTCTTTTGAGTTGAGGACGCCGGGCAC 71268 29 100.0 32 ............................. CGCAGCGAGTTTTGACGCCGCATCCTTACTGA 71207 29 100.0 32 ............................. AATTTTTGGGCGCTCGTGTGCCGCAGTAACCG 71146 29 100.0 32 ............................. GTGGTGACAGTTATTCCGAGTCCGTACCCGCC 71085 29 100.0 32 ............................. TGCGGCGGTCGAGAGGTTGGCGAACGCAGTGT 71024 29 89.7 32 .C.........AT................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 70963 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATCCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATGAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTAGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAATGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGACACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACCCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //