Array 1 27548-26000 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLU01000001.1 Staphylococcus pseudintermedius strain GL118B NODE_1_length_405048_cov_24.241768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27547 36 97.2 30 ............................G....... GAAGCCCGCTCTGTTTATACGGCAGTAAAA 27481 36 97.2 30 ............................G....... AAGGCGGTAAGCGTTATATCGAAATTGAAC 27415 36 97.2 29 ............................G....... ATGAAATTCATTACACAAGCTTGAAACAA 27350 36 97.2 30 ............................G....... TTTAAAAATGGTTGCAAGCCTTGGAATGTC 27284 36 97.2 30 ............................G....... GCCAAGACTTTAGTAGAGCAGGCAAACGAT 27218 36 97.2 29 ............................G....... TAAATCATTAGACAATGCGTGTCGTGTTA 27153 36 97.2 30 ............................G....... ATATTCTGTGTTATTATCATGTGAAATTCT 27087 36 97.2 31 ............................G....... AAAGTATTCTAGTAGATCTTGATAAGCGTAA 27020 36 97.2 29 ............................G....... GAGATGACGCTTTTACAAAATCTTTGGCT 26955 36 97.2 30 ............................G....... CAAAACTGAATAGATACGATAGGTGTTTCG 26889 36 97.2 29 ............................G....... AATGCTGGCACAAAAGATGGTGGACGTGA 26824 36 100.0 29 .................................... CAAAGCCCCAAACTTCAAATGGTGTAACT 26759 36 100.0 30 .................................... TACCTATATGCTGAAGTATCATACGCTCCG 26693 36 100.0 29 .................................... ACAAATTGGACAATGAGTACAGGTTGAGT 26628 36 100.0 30 .................................... TGAATCTCGTATAGCATGGCATACTGCTGA 26562 36 100.0 29 .................................... AGAAAAGATGAACACAGGTGATGAAGCGT 26497 36 100.0 31 .................................... ACAACGGATATGAAGAAAATATACAGAGCGG 26430 36 100.0 30 .................................... CAAAAGTTTGATGGCCACGTATGGGTTTCT 26364 36 100.0 30 .................................... GACAGAATTACAAAAGGAATTACGCAAACG 26298 36 100.0 29 .................................... TCCTCTTCATCAGTTCTGTCTGTTTATTA 26233 36 100.0 30 .................................... AAGGTGAAATGGTCATGAAGATTAGAAGTG 26167 36 100.0 30 .................................... AAATCAAATGGAAAAAGAAGTGACAGGCTC 26101 36 100.0 30 .................................... GTTATGATGTTTGGCGATATGGGTCGTCGT 26035 36 77.8 0 .........T................AC.TC.TT.A | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 97.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //