Array 1 15338-17137 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKNN01000049.1 Escherichia coli strain MOD1-EC1933 MOD1-EC1933_49_length_27601_cov_45.762, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15338 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 15399 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 15461 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 15522 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 15583 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 15644 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 15705 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCTCGGAT 15766 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 15827 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 15889 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 15950 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 16011 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 16072 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 16133 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 16194 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 16255 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 16316 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 16377 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 16438 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 16499 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 16560 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 16621 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 16682 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 16743 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 16804 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 16865 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 16926 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 16987 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 17048 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 17109 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 205915-207285 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKNN01000003.1 Escherichia coli strain MOD1-EC1933 MOD1-EC1933_3_length_207456_cov_43.9553, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205915 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 205976 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 206037 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 206098 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 206159 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 206220 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 206281 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 206342 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 206403 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 206464 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 206525 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 206586 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 206647 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 206708 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 206769 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 206830 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 206891 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 206952 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 207013 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 207074 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 207135 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 207196 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 207257 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCAGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //