Array 1 588-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000077.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 587 35 97.2 30 -................................... GTTGAAGCGTTCGTGCCCAGAAGGATTGCC A [568] 521 36 100.0 30 .................................... AATTTCTTAAAGAGTTGATCACGTTTCGAT 455 36 100.0 30 .................................... TGGTATTATCGTTTTGTTTGGCGGCGGAAT 389 36 100.0 29 .................................... TGTTGGGAAGAACTCATACGGTCATCCGA 324 36 100.0 30 .................................... TCACCCGGACGGGCGGAGATGACACGCTCT 258 36 100.0 27 .................................... AAACATTAATGAGCCACCCTTTTTAAT 195 36 100.0 30 .................................... TGTTAAAAACCACTTATTTGATGTCTTAAA 129 36 100.0 31 .................................... TATCAGGGAAATGAATGAGATCTTTGACAAG 62 36 80.6 0 C.ATACT.A........................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 97.5 30 GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Left flank : | # Right flank : TAGGTTAAACGGTTTATGATTGAAACA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 338-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000082.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 337 36 100.0 28 .................................... CTGATGACCGAAAGAAGCCGATGACCCG 273 36 100.0 30 .................................... CTTGAAGATGATGCACATTCTGTGCTGGAC 207 36 100.0 30 .................................... TAGCTATTTATTATACATGCCATATGCCTA 141 36 100.0 30 .................................... GTTTATTTGAATTGGGTTTGGGAATAGGAA 75 36 100.0 0 .................................... | G,T [47,55] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 ATCGTATCACATCAAGTTTTACAGGGGAAGTATGGC # Left flank : AAGTATGGCCATTACACACTACAATCTGCCCGCCTGCC # Right flank : CCTTCTGCACCCATCCGCCGAACGCCTACACAGTACGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTATCACATCAAGTTTTACAGGGGAAGTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 53-877 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000027.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53 36 100.0 30 .................................... CTGCGCTTCCTCGGTGTCTTTGAATGCCTG 119 36 100.0 30 .................................... GGTGTCTGCTTGTCAATCGGTAGAAAATAG 185 36 100.0 30 .................................... TCTTCTCCAATTGTGTCCGCTCTCTTTATG 251 36 100.0 30 .................................... GCAGACGGTTTTCATCTGGCTTATGAGGAC 317 36 100.0 30 .................................... CTGACAGTGATCATTGATGGTATTCATTAC 383 36 100.0 30 .................................... CACAGCGCGCATTGGTCGGTACAGTTTCAT 449 36 100.0 30 .................................... TTCACGGATGAGATAATCACATCATTTTCA 515 36 100.0 30 .................................... TCTCCCTTATTTGTTGTTACTGTTGGAGCA 581 33 91.7 30 .................---................ TAGATACTCTATGTATCATATAAAATAAAT 644 36 100.0 30 .................................... ACATGCTCATTTTACATGAGCGAAGGGAGT 710 36 100.0 30 .................................... TAAACAAAAAACTTCCCTACATTATCCAGA 776 36 100.0 30 .................................... ACAGCAGCATCGATATTGCAAAAACTGGAA 842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.4 30 GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Left flank : GTAAAACTTGATGTGATACGATCATCTTACTGTTGGAAGCATTGATGGACAAG # Right flank : TACATGCCCCTGAACCCCTTGATACATCCCCATTTCAGGGAGTTCTCACTTCAAAAAAGCAGCGCAAAAGCGTTGCTTTTTTGCCTATCTATTCTTCTTTTAATGCGATCTATGTAAAAAAATAAGAGGATTGCTAAAAAAGCAACCCTCAATTCTAAAAAAAATCCGTTTTATTTGCACCCAATTTTTCTTCCGGAGTATCCTCTCCAAGCAGAATGTCCATATTTTCAAACTGTTTTTCAGTGATTTTCATTGAACGGATTGCACCATTTACCGGCGGAAGATGTTCTTTCAGCCGTTTCATATGTTTTGTGACCCCATCTTCTCCATTGCAGATTCGTGTGTACACAGAAAATTGAAGCATGGTATAGCCATCCTTGAGTAAAAATTTTCGAAAATGGCTATAGGCTTTCCGTTCACGGATCGACGTTACCGGCAGATCAAAGAATACCAGGATTCTCATAAACTTACTCATACGAATGAATATGCACATTAACTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 51-416 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000023.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51 36 100.0 30 .................................... AGTTCCGTCTGACAGTGCTGTAACAATAAC 117 36 100.0 30 .................................... ATATTGTTTCAACTTCTACCCTGTACTTTT 183 36 100.0 30 .................................... AGGCTGCGGCGTTGATCATGACACCAGGAA 249 36 100.0 30 .................................... CCCGGACATGATGTCCCCGTCAAAAGAATC 315 36 100.0 30 .................................... TACATAGAAGTGATTGCCGTTAGGGTTCGT 381 36 94.4 0 .....................T.....C........ | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 ATCGTATCACATCAAGTTTTACAGGGGAAGTATGGC # Left flank : ACGTACTGTGTGAAGTATGGCCTTCTGCACCCATCCGCCGAACGCCTGACA # Right flank : CTATCTCACCTATGAGGGATTGAATCACTCAGTCAGTTTATCATATATTTTATAATTTTTGGAGTCCTGAGAAATTAGACAGTCTTCTCATTAACTGAGGTGGTTGGCAATGATCATTTTTCTCAGATATAATTTAATTAGTTGTCTTCCGAATTTTCATATTCTTTTCTATCCGAAAAAAGATAGTCAATCTCTTTAAAAAACAACAGAGGTTTTCACGATGGACAATAATGAGCAAATTCAAAAATTAATGATGGAAAATAAACGTCTGGGAAAAGAAAATGCTTATTTAAAGCGTTTGAATGCAAAACTCATGAGGGAAACGCCGGACAAAACAAGTGTCACTCCGGAAAGGGTGACAGAACATCTTTCTGATTACGAACCAATGACCAGCGAGAAGCAACTTATCTCTCGATATGCCACTTCTGTGGAAAAAATAAGATTATACCGGTCTCTTTTTCGTGGCAGGGATGATACCTATGCAAAGCGTTGGGAATCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTATCACATCAAGTTTTACAGGGGAAGTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 292-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000084.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 291 37 100.0 28 ..................................... TCCTTTGTATAGAGTGTTTTTCGATAAG 226 37 100.0 29 ..................................... AAATGTATTTTTATGCTCTTTTTGAGTAT 160 37 97.3 29 A.................................... GGAACAGCTTGGATTAATCGTATAGATCA 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GGCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Left flank : A # Right flank : TTTATTCAGTATGGATAATAAGTAAACAATGGCCATACTTCCCCTGTAAAAACTTGAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 7-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEY01000083.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 29 .................................... TTTTAGCTTGTTTCTCGGTAATTGGAAAA 72 36 100.0 29 .................................... CATATTGATTAGTTGCCCTTGCTGAACAT 137 36 100.0 30 .................................... AAGCGGTGATATTTATATACTAACTCCTGA 203 36 100.0 30 .................................... CATCTAGTGTATAAGAAAGTTCCTTGCCTA 269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Left flank : GATAATG # Right flank : GAAAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATACTTCCCCTGTAAAACTTGATGTGATACGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //