Array 1 1181051-1180288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066073.1 Streptococcus dysgalactiae strain FDAARGOS_1016 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1181050 36 100.0 30 .................................... TGATATAAGAGTTCCTTCAGTATAGGGTTT 1180984 36 100.0 30 .................................... AGTGTTAAACCTAAAACAATTTGAAGATAT 1180918 36 100.0 31 .................................... TCACGCTGTTGACGTTCTTCTTCGGACAATT 1180851 36 100.0 30 .................................... TCTTGGATTCAAAGATGTCTAGAAGAAGCA 1180785 36 100.0 30 .................................... CTATTCAGATGAATTGAAGCGAAATGAAGA 1180719 36 100.0 30 .................................... AAAGCAATTAGCTCTTGATGATGCTGAAAA 1180653 36 100.0 30 .................................... CTGAAGCGATTTAGACTAAACGTGTCTAGT 1180587 36 100.0 30 .................................... GGTAATGGCGAAGATCGTAAAAAGGTACTC 1180521 36 100.0 30 .................................... TTATCCTTTGAGTTACACGGCTATTTTAAC 1180455 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 1180389 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 1180323 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.5 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1541689-1540260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066073.1 Streptococcus dysgalactiae strain FDAARGOS_1016 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1541688 32 100.0 35 ................................ ATCCATTTTTACCTCTCTAAATAATCATCTGGAAT 1541621 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 1541551 32 100.0 34 ................................ AAATTGCAACCTAGCAAATTCTACTTTCTCGACC 1541485 32 100.0 34 ................................ AACAATGTAACCAAAACCTGCTAAATATGCTTCA 1541419 32 100.0 36 ................................ TAATATTCTTTTTACTTTTACATGTGTCCACGTATT 1541351 32 100.0 34 ................................ AAGTCATCACGTAAATTTTGCAATAATTCATCTG 1541285 32 100.0 33 ................................ AAAAATACGACAAGTAGCTATACATCCGTTAGC 1541220 32 100.0 34 ................................ ATCTCGCTCTAAAAAAGTTTTATAATATGCTTTT 1541154 32 100.0 34 ................................ GTTTAGCTTATGAGACTATTATAGACTAGTACGC 1541088 32 100.0 36 ................................ ATAATAAAAATCTGAAAGGTCTCTTGAATAAATAAC 1541020 32 100.0 34 ................................ AAAAGAACGCTTGTGCTTTTAAGAGAACGGTGGT 1540954 32 100.0 33 ................................ GTTTTAATATCTCCTTAATTTTTTAATTGTTAA 1540889 32 100.0 34 ................................ AAATGTTTTTGTGGGTAAATAATCATATAAACGC 1540823 32 100.0 34 ................................ TGAAAGTAAAGCTTACATATTTTTCGTTATTCAT 1540757 32 100.0 34 ................................ ATTTTAATATCTCCTTAATTTTTAATTGTTAAAA 1540691 32 100.0 35 ................................ TACGTTTACAGTCATGTAAACCCCTTTCTTTAAAA 1540624 32 100.0 33 ................................ GTTTTACCACTACCTCTACCTATCACACAATTA 1540559 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 1540493 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 1540425 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 1540357 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 1540291 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 99.6 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : CAAAGGGATCTATCGCTTAGATTTACCGACAGGAGCTGGCAAGACTAATCTTAGTATGCGCTATGCGTTTCACCAATTAGTTCATCAAGACAAATCAAGTTTTTTTTACATAACGCCCTTTCTTTCGGTCCTTGAGCAAAATGCTTCCGAAATTAGAAAAGTTACAGGTGACCTTGGCGTCCTAGAACACCATTCCAATGTGGTGAAACAGGCTAATGAAGATGATGATGACAAGGACAGTTTATTGTCAGCTTATCTTAGTGATAGCTGGGACAGTCAAGTAGTCTTGACTTCTATGGTTCAATTTTTCCAAACACTTTTCAAAACAAAATCAGCTAATCTGAGACGTTTTTCAAGTTTGATTAATAGTGTTGTGATTCTAGATGAAGTTCAATCCCTGCCTATTGAAGTCACCACTTTGTTTAATTTAACGATGAATTTTTTAAATAAAGTTGTGGATTGAAATCTTTTTTACATAATAAAAAGCCACCACAATGTGA # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //