Array 1 22771-22442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFX010000005.1 Erwinia amylovora strain MLI217-18 NODE_5_length_267933_cov_15.210938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22770 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22710 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22650 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 22590 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 22530 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 22469 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 34218-32234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFX010000005.1 Erwinia amylovora strain MLI217-18 NODE_5_length_267933_cov_15.210938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34217 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34156 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34095 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34034 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 33973 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 33912 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 33851 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 33789 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 33728 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 33667 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 33606 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 33545 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 33484 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33423 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 33362 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 33301 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 33240 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 33178 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 33117 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 33056 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 32995 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 32934 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 32873 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 32811 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 32750 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 32689 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 32628 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 32567 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 32506 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 32445 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 32384 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 32323 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 32262 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47288-45125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFX010000005.1 Erwinia amylovora strain MLI217-18 NODE_5_length_267933_cov_15.210938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47287 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 47226 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 47165 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 47104 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 47043 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 46982 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 46921 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 46860 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 46799 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 46738 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 46677 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 46616 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 46555 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 46494 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 46433 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 46372 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 46311 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 46250 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 46189 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 46128 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 46067 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 46006 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 45945 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 45884 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 45823 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 45762 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 45701 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 45640 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 45579 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 45518 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 45457 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 45396 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 45335 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 45274 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 45213 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 45152 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //