Array 1 27295-28117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009716.1 Corynebacterium ulcerans strain 05146 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27295 29 100.0 32 ............................. AAGGGCATTCCACCTCATCGGGCAATCGCCTC 27356 29 100.0 32 ............................. ACCGGGATCAGGCCAGGTGTGAGCTTCGCGAA 27417 29 100.0 32 ............................. ACCGGGATCAGGCCAGGTGTGAGCTTCGCGAA 27478 29 100.0 32 ............................. CGGCACGCCTCATAGGGCGCTTGAGTATCGAA 27539 29 100.0 32 ............................. TTTAAGCCCGCGCAGGGAAAGTACCGCTTCCT 27600 29 100.0 32 ............................. AGGTCAATAGTGGCGACAATCGGTATGGGTTT 27661 29 100.0 32 ............................. GGTAAGCGCCACAGGCGCTAGGGAGGCGGTCA 27722 29 100.0 32 ............................. GGGTAGCTACCGACGCTTTTGATATAGGTAAT 27783 29 100.0 32 ............................. GAATACGGATTCCGGTGCCACAAGGCCATAAT 27844 29 100.0 32 ............................. ATTTTCAATCTTTTCTCGGATAAACCCCACCC 27905 29 100.0 32 ............................. TTCAAAGCAACACCAGCGCAAAGCGCCAAAAC 27966 29 100.0 33 ............................. CTGCCAGACCTGCCCACGTGGATCTTCGAACTC 28028 29 100.0 32 ............................. TCTCCGGGGCACCCTCTTCCTGAGGCTCCGGG 28089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : AGTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTGCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTGGAACTTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGCCTTTCCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTTGTCCGCGGATTTCACAACACCATGTTTGACCAGCGTTTTTATCGCCTCAAAAACTTCCTTAATTTTTGTCGTCTCCACGGTGGTGTTATCGCCTTCAGGCCACACCATAGGGGCACTACGCTGCACAATCGCCTTATAACCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGCTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGACCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCTGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 106269-105358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009716.1 Corynebacterium ulcerans strain 05146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 106268 36 100.0 36 .................................... GCAGCTCTCCAGAGGCTCGCTCCGCCCCGAGATGGT 106196 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 106125 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 106052 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 105980 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 105905 36 100.0 36 .................................... GTGGGTGATGTGCTTTTGAAGGATCCCGAGCGGGCT 105833 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 105759 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 105688 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 105613 36 100.0 37 .................................... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 105540 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 105466 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 105393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1915317-1918703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009716.1 Corynebacterium ulcerans strain 05146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1915317 29 100.0 32 ............................. GCGGCCCTGGCAGCGTTCGCAGGCGCGAAGGT 1915378 29 100.0 32 ............................. TAATCGAAAGGTTGCCTAATTATGGCTGCTAC 1915439 29 100.0 32 ............................. TACCCGAGGAGTGGGAGGTCACTCGTGCTGAA 1915500 29 100.0 32 ............................. GCGCCAAGTAGCGATGAAGCGGAAATGCCGGA 1915561 29 100.0 33 ............................. ATCAGACGACGTTCTCATGTGGGGATCGAATGG 1915623 29 100.0 32 ............................. AAGGGGGGCCGCGAGGCGTGCAGAAACATCAT 1915684 29 100.0 32 ............................. ATGGGCCGGTGGGTAAAACCCCGGCCCTGCGA 1915745 29 100.0 32 ............................. ATCATGGAGGCGAGGCTTGACAAGCTTCAGGT 1915806 29 96.6 32 ............................T ATGCCACAGGGTAGGTTTGATATTCGTGGCGT 1915867 29 100.0 32 ............................. CGCACCTATCCACGAAAGGTTGGCAAGCAGAA 1915928 29 100.0 32 ............................. GTGGTGAGCTATCCGGCTTGGTGGAGCAGGCT 1915989 29 100.0 32 ............................. GAGACCTCGCTTTAGATGTCACCGGATCAATA 1916050 29 100.0 32 ............................. GCTGCGGGTCCGAGCTTCGCGATCACGCGGTC 1916111 29 100.0 32 ............................. GACTGGACATGCCCGTCCTGCGGCACACAGTG 1916172 29 100.0 32 ............................. ATCCAACGTCATCGCCGCCGAAGCATGCCCCA 1916233 29 100.0 32 ............................. ATCCCAGACTCCGAATCCGGTGTTTTATACCC 1916294 29 100.0 32 ............................. TTTAATTTTGGGTATGGTGATCCCCGAGCAGC 1916355 29 100.0 32 ............................. GGGGTTTAGCGCTCGATTGTTCGATGAACTCA 1916416 29 100.0 33 ............................. CCATCACAACCCCCTTTACGTGTGATTACTCAG 1916478 29 100.0 32 ............................. ACCATCGGTTCGTGTGAGCCATTCGGGGGTGT 1916539 29 100.0 32 ............................. GATGTGGACGCGGTATAAATATTGCTCACTCA 1916600 29 100.0 32 ............................. ACGGTGGGAAGCTGTGAGGGTTAGAGTGTTTC 1916661 29 100.0 32 ............................. ATTGTTTGTAGTCCCTGCCCCACAGCGGTTAC 1916722 29 100.0 32 ............................. GTGAAATCTTCTGATTTTGAGCTGGTGTATTC 1916783 29 100.0 32 ............................. CAAAGGTGCATCCACATGATCACGCGCTCGCT 1916844 29 100.0 32 ............................. GTCGCGAATCTGATGCTCGGTTAGCCGCAGTT 1916905 29 100.0 32 ............................. GGCCTAGAAGCCGTGGATGTACTCAAAGAATT 1916966 29 100.0 32 ............................. CCGCAGGTGTGGGAAGCCCTGTGTGAGCTAAA 1917027 29 100.0 32 ............................. GGCAACGTGCCGGTGGGTGTGGCATTTTCCCA 1917088 29 100.0 32 ............................. GGTCTTGACGTCAGCCTCAAGGGTTGCTACAC 1917149 29 100.0 32 ............................. TCCGTTGGCTACGATGCTCCCCATGATCGCTT 1917210 29 100.0 32 ............................. CTCGGACTCCACAATTTCACTCAGGTATTCGG 1917271 29 100.0 32 ............................. GAGTACACCGCAGCGGATCGCCCCATACCGAA 1917332 29 100.0 32 ............................. CGTCAGTGGTTTATTCATCGTTTCTGCTTTCT 1917393 29 100.0 32 ............................. GCTAAAAGCTCAGCCCCGCTTTTCCGAATCCC 1917454 29 100.0 32 ............................. TGGAAGCGATTGGTTATCTCGAACGACTGCAA 1917515 29 100.0 32 ............................. ATCCTCCTATCACCAAAAATAGGAGGGATCCA 1917576 29 100.0 32 ............................. ACGGTCCGTGGGTCGATTGACATCCACAACAA 1917637 29 100.0 32 ............................. CTGCGACCACCACGACTGTGACCCGTTTTTAG 1917698 29 100.0 32 ............................. GCGTGGTGGATTCATTTTCACGCCGCGCTATG 1917759 29 100.0 32 ............................. TGGCTGCTCACTGACGAAATAGGTCATGTATG 1917820 29 100.0 32 ............................. GATATGGTCGAGGTGGAGTGCACGTCATTGTC 1917881 29 100.0 32 ............................. AAGACTGCTTGATCATGCTCTACTGCCGCTGC 1917942 29 100.0 32 ............................. AGCTTGTTGGAAAGAAGACTGCGCACCTTGAA 1918003 29 100.0 32 ............................. ATCCTCAACGGTTTTGAGAACAGTTAGTGGTT 1918064 29 100.0 32 ............................. ACTTCTGCCTGAATCCAGTAGCCGTACCATTG 1918125 29 100.0 31 ............................. ATCAATGGCGATGTGATTGCCTACGACCTCG 1918185 29 100.0 33 ............................. CATCATCGTGATGGCAGTGTGGCGTGCAACGTG 1918247 29 96.6 32 T............................ GGGCTAGAACCCGTGCGTCTTGATCCTGATGG 1918308 29 96.6 32 ............................T AGCTGTGCCCATAGGCGACAGTAGCGTAGCGG 1918369 29 100.0 32 ............................. CAGTTGCGGTCGAAGCCGCTGCAGCGGGCTGG 1918430 29 100.0 32 ............................. GCTGGTTTCGGTGTTGCGGCGAATATTGTTGC 1918491 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 1918552 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 1918613 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 1918674 29 82.8 0 ....................A...AGC.T | A [1918693] ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.5 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCAGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //