Array 1 2280-2906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSL01000116.1 Pseudomonas aeruginosa strain AZPAE14904 AZPAE14904_contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2280 28 100.0 32 ............................ AGGTGGTGGTCATCGAGCGCAAGCTCGATGGC 2340 28 100.0 32 ............................ CTCTGGCCTGTCGTAGTACATGCTCTGGTACT 2400 28 100.0 32 ............................ TTCGTCGGTGACCTGGATCACGAACTGTCCGC 2460 28 100.0 32 ............................ TGGATCACGAACTGTCCGCGCAGGCCCGATGC 2520 28 100.0 32 ............................ ACCTGGCGCGCCGCAGCACCGCCGTCGACCGT 2580 28 100.0 32 ............................ AGCCCCATCGCGTAAGTGGTCCCGCCGGCCGT 2640 28 100.0 32 ............................ ACGGTCGGCGCACTGGAGGTCCAGCGCAGGCC 2700 28 100.0 32 ............................ TAAGCCAGCTTTCCCGAAAGTGTGAGGAGCGC 2760 28 100.0 32 ............................ TACCGGTCCAAGTGGGGAATCACCACCGACAC 2820 28 100.0 32 ............................ AGGAACGTTTCTGCTAGCAGGGAGAAAGCTAT 2880 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12298-8609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSL01000013.1 Pseudomonas aeruginosa strain AZPAE14904 AZPAE14904_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12297 28 100.0 32 ............................ CGCGTGATCGGCGCCTGTCGCTGATCTACAAC 12237 28 100.0 32 ............................ AAGCTGCTCAGCTACGGTCAGGAAGTCGACCG 12177 28 100.0 32 ............................ TGGCTGCAGCGCTTCGGCATTGGGCCGAAGTC 12117 28 100.0 32 ............................ TTTTGGCGTTCGGGAAATGTTCGTCAGAAAGT 12057 28 100.0 32 ............................ TTGAACACGTAGTTGCCGGCCACCTTCAGGCT 11997 28 100.0 32 ............................ TATTACGTGGATATGGACCGTTGGGGGCTCTG 11937 28 100.0 32 ............................ GCTTCCGCGATGCGCTCTCGGAGAGGCGTGCC 11877 28 100.0 32 ............................ TTGATCACCGCGCCATTGAGCTTACCGTTCGC 11817 28 100.0 32 ............................ ACGAGGTGACCGAGGCCGGGGTACTGCCGGCG 11757 28 100.0 32 ............................ TGCAGGCGCCGAAGACATGGCTGGGGTCTGCT 11697 28 100.0 32 ............................ CATGCCGGGCGTCCCGCTACCGCTGCCGAACG 11637 28 100.0 32 ............................ TCGCATGCGGTACCGTTTCGGATCATGTTCAG 11577 28 100.0 32 ............................ ATGACCCAGCTCGGTACGCCGGCCGAGATTGT 11517 28 100.0 32 ............................ GTTGGACAACTTCGGGAAAGCGCCGGAGCGTC 11457 28 100.0 32 ............................ AAGCTCCTCAGGAGGAATAAGGCCTTCGCTTT 11397 28 100.0 32 ............................ TCCAGACCTACGTTGTTATCGACCCAGTAAGC 11337 28 100.0 32 ............................ AAATCCCGGAGGGCGAAGCGAATGCCAAATTA 11277 28 100.0 32 ............................ TGCCGGGTTCCCCAACGCAGGCCCGATCCACC 11217 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCGACTACTCG 11157 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 11097 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 11036 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 10976 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 10916 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 10856 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 10796 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 10736 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 10676 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 10616 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 10556 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 10496 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 10436 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 10376 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 10316 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 10256 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 10196 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 10136 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 10076 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 10016 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 9956 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 9896 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 9836 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 9776 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 9716 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 9656 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 9596 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 9536 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 9476 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 9416 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 9356 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 9296 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 9236 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 9176 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 9116 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 9056 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 8996 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 8936 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 8876 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 8816 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 8756 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 8696 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 8636 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSL01000139.1 Pseudomonas aeruginosa strain AZPAE14904 AZPAE14904_contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 110 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 170 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 230 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 290 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 350 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 410 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 470 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 530 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 590 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 650 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 710 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TATAGGCAGCTAAGAAATGTAGCGGCCCGTCGCCAGGCCATCCTGGATGG # Right flank : TGCTCGCTGATGACCAGCCGCAGCGCATGGTTGTTCACTGCCGTATAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //