Array 1 39672-44504 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVEW01000004.1 Vibrio cholerae strain 17-VB00339 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39672 28 100.0 32 ............................ TTAACTGCATTGCCAACGATGCGGACGCTAAA 39732 28 100.0 32 ............................ TTATGACACTTACATAAGAGGAAAAGAGTCAC 39792 28 100.0 32 ............................ GCTTGGTTTGCGGTCACTGCATGCTTAGATTT 39852 28 100.0 32 ............................ TGTGTACTTTTCACCTGGGCGACGGGCAACCG 39912 28 100.0 32 ............................ AAGAAGAGCAAGCAGTTCGCGATCGTGAAGAG 39972 28 100.0 32 ............................ AGCAGAAAAAATACCTTATGAGTCAATAGAAG 40032 28 100.0 33 ............................ TCTCGCGCTTGCTCCAACTTCTCAAGCCTTCTT 40093 28 100.0 32 ............................ GCCAGATTCTGATTGCACCATAATCAAAATCG 40153 28 100.0 32 ............................ GCACCACTGGCCAGTGTTGGCAGTAGGATGTT 40213 28 100.0 32 ............................ TCCACGAATGCCGCTATCGTACCTGACGTGAA 40273 28 100.0 32 ............................ TGATCATGGAGGCGCGTCTTTCTGGCGCACCT 40333 28 100.0 32 ............................ TTTCATTTCTTACTAGCTGCGGCCTTGTGCCT 40393 28 100.0 32 ............................ ACCCTGCGGCAGAACAACACCGTTCTTGATTG 40453 28 100.0 32 ............................ AGTGGACGAGTTGACGCAGAGGTGGAGCTGGG 40513 28 100.0 32 ............................ GCTTAGAACGGCGAGCAGCAAGCTTGCGTTTT 40573 28 100.0 32 ............................ TTTCAACGTGCCAGCCGTCGGATTGTCCGGCG 40633 28 100.0 32 ............................ CGCAGCAGAAAAAACAAAAAACTTTGCAGGGG 40693 28 100.0 32 ............................ TGATGCCATTGTTGCTGCTTTCGATTCAAAGC 40753 28 100.0 32 ............................ GCGCTCACGATGCAACACGGCCAAAGTTCTAT 40813 28 100.0 32 ............................ CCGATTGCACAGCGTCTATTGTTGCCGCTTGC 40873 28 100.0 32 ............................ TCGGGCAAGTGGGAAAAAATATCGACTCGTAA 40933 28 100.0 32 ............................ TGATCCGCCAAAATCCCGCCAAATCCCTATCT 40993 28 100.0 32 ............................ CAAAAAGTCCTTAACACTCTCGACGCACGTAT 41053 28 100.0 32 ............................ TAATGGGATAGTTGACGAATACAACCTATTGC 41113 28 100.0 32 ............................ TTATCTATACAACGGCGCTGTTTTTGTGGTGA 41173 28 100.0 33 ............................ ATTATCGGCGGTGGCGATACCTCGCGCCGCTTT 41234 28 100.0 32 ............................ CTGGGTTGGCAGGAACATTCCCAACGGTGACT 41294 28 100.0 32 ............................ TTAAAAATAGAGTTACAGCCCTTGGAATATCC 41354 28 100.0 32 ............................ AGCAAGTCAAGGGGCTACGCCAGCAACAGGAA 41414 28 100.0 32 ............................ TACTGTAGCTAAATAGATAAGGCTCCCCAGTT 41474 28 100.0 32 ............................ TCATTGATGAAGCCCAGACCTTTTTTCCTCCT 41534 28 100.0 32 ............................ TGAAAAAGTTTTGGAGCCATTCGCTTGATTAC 41594 28 100.0 32 ............................ CACCGGGTGTAACGAACGCCGTCAGACGCTGG 41654 28 100.0 33 ............................ CAATTGAGCTACGCTGGCTGCACGATTTACGCA 41715 28 100.0 32 ............................ GAACTTAGATTGTTTAAATTCGACTTCAAAGG 41775 28 100.0 32 ............................ TCGCGGAATGAGTCAGGCTAAACCTACTGCTG 41835 28 100.0 32 ............................ ATTTGTAATCGCTAGGCTTCCACGGGGTTTTC 41895 28 100.0 32 ............................ TGCATCACTGGCGATGCGGCCAATGGCATTAA 41955 28 100.0 32 ............................ TCTCGCGCTCAGTCTGAGGTATTCCGCCGCTA 42015 28 100.0 32 ............................ AGTCTGACGAGGCGAAAATCGTTTTCGATGGC 42075 28 100.0 32 ............................ GTAGCCGCGCATATCTAATGCGCCGTGAGTGG 42135 28 100.0 32 ............................ ATAATGAGCGGCGGACTAATTGCCATGTCGTT 42195 28 100.0 32 ............................ TTGCAATTCCAGTCGGCGATATAGCGGATTTA 42255 28 100.0 33 ............................ AGCAAAGAACGGCAAATTAACCTCGCTTTCCTC 42316 28 100.0 33 ............................ AATCGCCGCAGCAGCTAAGTTTGAATCCTCAAT 42377 28 100.0 32 ............................ GTTTGAACTCGACCTATATTTAAAACTCCGTC 42437 28 100.0 32 ............................ GTCAACCAAGTTGTATTCGCTAGCGTCTTTGC 42497 28 100.0 32 ............................ TCTCTGAAAAATATTACATTTTCCGGCTCATT 42557 28 100.0 32 ............................ TACTAACCTTAGCGGGTGGGGGTCCTGTGTGG 42617 28 100.0 31 ............................ TTTTACGATCGCGCAAGCGAGATTCTGATTT 42676 28 100.0 32 ............................ TTCTTGGATGGTGCCATTGTAGGGATTGGTTT 42736 28 100.0 32 ............................ GTTAAAACCTTCTCAAAGTGGTTCATTGCCTG 42796 28 100.0 32 ............................ CAATGGTTAGCGCCATCCAAGCGTCTGCACCT 42856 28 100.0 32 ............................ GTAGCCAAAATGCTCAATGCCGATTTACTGGT 42916 28 100.0 32 ............................ CATTAAAACAAACCGTTCCCTATTTATTAATG 42976 28 100.0 32 ............................ AGTATTCGCTTGGGTTGGAAGCCGTCACGCTG 43036 28 100.0 32 ............................ TGACGTTTGGGGTAAGAAAACTAGGGCGAAAT 43096 28 100.0 32 ............................ GATACGGTTTACCAGCGACAAATCGACAAGGC 43156 28 100.0 32 ............................ TGTTCGCTTTTGTTGCTGTTTGCGCCCAAGCG 43216 28 100.0 32 ............................ AGTTTTATTTTTTGCACTAAGGCAGCTACTAA 43276 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACAAGCT 43336 28 100.0 32 ............................ TTGTCCAGAAGTCCCTTCACTGCGTTTAAGTG 43396 28 100.0 32 ............................ TGCCGCTTTTTTCTTTGGTACGTATGGCTGAA 43456 28 100.0 32 ............................ ACCACGGGCATGATGTTCATTTAGTCACTCAA 43516 28 100.0 32 ............................ ACTTGCACCAAAGATAACGGCGAAGGATTCGG 43576 28 96.4 32 ...........C................ TTTTTGCTATCGAATTGCTACCTTTTGCCCTT 43636 28 96.4 32 ...........C................ TCCAAGCGAAAACCAAAAACCGAATCAATGAA 43696 28 96.4 32 ...........C................ GTCATGCGTCCACCACTATGATATTTTCAACG 43756 28 96.4 32 ...........C................ ACTATGGTATTGAATCACGGATTGAGGTGAAA 43816 28 96.4 32 ...........C................ TTTAAGCGCAGCAGCAGAGGCATTACTCAATC 43876 28 96.4 32 ...........C................ AATACGCATCACAGATGCCAAATGTCGTTTAC 43936 28 96.4 32 ...........C................ AGACAGCCCAGCGGCGGCCAGCGTGTCTTTTA 43996 28 96.4 32 ...........C................ CACCAGCGCCATTTCTCCAGCCGTGCTGCATT 44056 28 96.4 33 ...........C................ AAAGAGCGCCTAAGCCGTGATGATCTTATTGCT 44117 28 96.4 32 ...........C................ ATCATTAACGATGACATGCAGATGCTGCTCGA 44177 28 96.4 32 ...........C................ AAATTCAAATGGGCAAAATGGCGGTATCCATT 44237 28 96.4 32 ...........C................ GAAATATTGGGCATCGATGACACGCCATGCGA 44297 28 96.4 32 ...........C................ AGCAATGCCCCCACAGATAAAGCTTCCCATCT 44357 28 96.4 32 ...........C................ TGTAGGTGCAAAGAATTCTGCCAATTCTTCAA 44417 28 96.4 32 ...........C................ ACCCAAGCGCTCTAGAAAAGGTTGAATATCCG 44477 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 81 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //