Array 1 1334306-1334736 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906464.1 Staphylococcus muscae strain NCTC13833 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1334306 36 100.0 30 .................................... AAAAAAATTAAAAGATTACTAGACAGTGAT 1334372 36 100.0 30 .................................... CATTAACAGTTTGTCGTGAATTAACACTTA 1334438 36 100.0 29 .................................... TTTACGCCGCCACGCCCTTACGCTAAGTT 1334503 36 100.0 30 .................................... AAAAAGAAAAAAACCGCTTGGGAAAGACGA 1334569 36 100.0 30 .................................... TCACGCACTCTTGCCCCATATAGTTTTGCA 1334635 36 100.0 30 .................................... TTCCATTTTTGGGGCGAAGCCGGGGGTGCA 1334701 36 77.8 0 ...................CCG...G...A.T.GC. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GTATGATCAATGTTACAGATATTCCAGCATCATATCAAAAACAACTTCACACTGACAGCGGCGTTTATGTTGCAGAAGTTCAACGCAGTCAAAGCGGGTTGAAACGTGGTGATATCATCACTAAAATCGATGATCAGAAAGTTGAAAACGATTCTGATTTACGCTCGTATTTATACAAAAATAAACAACCGGGAGATTCTGTTAAATTTACAGTTATACGTAATGGACAATCCGAAAACGTAAATGTAACATTAGTTGAGTCTCAATAATTAGATAAAACCATTGAAATGTTATTTCTGGCATTTCAATGGTTTTTTTCAATAAACTAATGAAGATTGATGAAACCTTCTATACATATTTCACAAAGTTGATATATCATTTCTCATTAATATCGCTGCATAGTTATGTCTTTTAGAAAAAACTTCAATACTTCTATAATCGAAAAATAGTGAAAATAACTGCTGAATTATTAAAAAGGATAAGGTACAATAATGCTAGAG # Right flank : CGGAAATTGTTGCTTTTGAATACTTTATAATAGGTGTACCTGTCGTTTTTTTAAGTTCTTTCATTTTAAAATTCAATAATCTTTTCTAAATTCTTATTGTAGATACATATAAAAGTATAAGAATCAATAACTATCACGATTAATAATTTAAACTCTTCCCTATATTCTAGAGACTGTTACAATTCTCACTCCTACTTCTCATTTCTATATAACTAAAAAAGCCAGTGATGACTCAATTAGAATACATCACTGACTTTTTCGTTTTATTGATAATTTACCATGAAATATTTTTTCTTACCACGACGAACAATTGTGAATGCGTTGTCATATTTATCTGCTTCTGACAATTCATAAGCTAAATCCGTTTCGCGTTCACCATTAATATAAATCGCACCGTTTTGGACATCTTCACGTGCTTGACGCTTAGAAGATGAAATTTTTGTTTCAACAAGTGCTTCTACGATATTTGTCGTTTTATTTGATAATATAACTTGCGGTAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1402767-1402602 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906464.1 Staphylococcus muscae strain NCTC13833 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1402766 33 100.0 33 ................................. AACTCTTGATGTCAGTAGTCCTACATAGCCTTT 1402700 33 100.0 33 ................................. AACACAAAAGGTTGATTTATTTGAGTATTCTCT 1402634 33 75.8 0 .....................T.T..CC.TACG | ========== ====== ====== ====== ================================= ================================= ================== 3 33 91.9 34 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Left flank : GATTTATTTTTAACTACATGATGTGTTGTTTTGCCTTTTGCTGCTTTAAATCATTTGGATACACAAAAAGCGCTCATGTCTCTATCATTTTAAGTGACTAAACCAAAAATAAAGAGAAAACATGATGCGCCTACATATAATGATATATTAAAACTAATAAAAATAAAAGATGGAAATATTCAAGTTATGAAGGTGGAAGAAGATGTAGAAGTGCGTGGTCGGTTTTCCACGGTTGTTTATGGAACACTTTCTTATACATCAAAGGTTGAATGAAGTGTGATTGTATCAATGATGGACAAATACATAAATGTGGTAACACTGTTAAAATCTTAAGAATCGTATATCTCAATTTAGTGAAAGAACGCTTTAAGTGTCTACATTGTTTAAAAAATTTATGGCTCAAGCAAGAACCATCTATGTAGAATATTTAAAAGCTGATATATTATTGCTAGAAATAAAAGCTGAATTATTGAAAACATTAGGGTATAATGATGCTAGAG # Right flank : TTACAAAAGACATGGTAAATTGAAAACAGACGAATTTATATGGAAATCAATTGATAGGAATATTAACTATGTTTAAACGATAATATGGTAATAGCTTTAAAAAGCAAATTGATTAATTAGTAGGACTTTTTCAAAAAGAAAGCGAATATTCAAAAAATATAAGTGAATTTATTTTAATATTAATGAGTTAGCTAAAACAATTGAATATTATAGTAAATCTCTCTCGAAAATCAAAATGAAAAGGTGATATGATGAGAAAAGAAATTGAAAAGTTATTAGAGTCTGATATATCGCATTATAAAATTTCAAAAGTAACAGGTGTAAACAGTAAGACAATTTCGGAATTACGAGCTGGGAAACGTAAGATTGGCAATATCACACTAGATACTGCTGAAAAACTATATAATTATCAAATACAGCTGGAAGATAAATGAATAAATCTCACTTATTAATTTGGGTGGGGTTAATTGTTGTTTAATTGATACCATTATGACGCGTAA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.19%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //