Array 1 1-1554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEO01000013.1 Streptococcus mutans strain 503_SMUT 168_1554_26555_60_,...,60_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAATAACATATAACTTATATTAATTTGGAA 67 36 100.0 30 .................................... AAATGTTGTTTTAATCGGTGATGTTGGCGT 133 36 100.0 30 .................................... TCATGGTTTGTTGATACTTGACATATTCAA 199 36 100.0 30 .................................... CAATACTTGGGAAAATTGACCACACAGGGT 265 36 100.0 30 .................................... CTTTAAGTTTTTTCTTGGAAGAAATGTACT 331 36 100.0 30 .................................... AAATTACTTAACAGATTTGCAAAAGCTCGA 397 36 100.0 30 .................................... AAAGTATCTGGAACTCAAGAAGTAAATGCT 463 36 100.0 30 .................................... ATGAACTTTCTTTTGCTGATGGGTGACTGT 529 36 100.0 30 .................................... CATTCCTTAGTTGCTTCTGACTGTCTTTCA 595 36 100.0 30 .................................... AGCAATTACCGCAGTTCCGTCAGCTTTCAA 661 36 100.0 30 .................................... GAGTACTTTAGGCAAGGCCTCGAGCGAGTA 727 36 100.0 30 .................................... TGGCGTTATGCAAGAAACTTCCAAAAATAT 793 36 100.0 30 .................................... AAGAACTTTGCAGAAGCTCTTAAGATTGCT 859 36 100.0 30 .................................... AATGCAACATCAGTATTATCAACTAACGTT 925 36 100.0 30 .................................... TGTAAACTTTTCAACCTGTTCTTGCGGTTG 991 36 100.0 30 .................................... AAATAACATATAACTTATATTAATTTGGAA 1057 36 100.0 30 .................................... AAATGTTGTTTTAATCGGTGATGTTGGCGT 1123 36 100.0 30 .................................... TCATGGTTTGTTGATACTTGACATATTCAA 1189 36 100.0 30 .................................... CAATACTTGGGAAAATTGACCACACAGGGT 1255 36 100.0 30 .................................... CTTTAAGTTTTTTCTTGGAAGAAATGTACT 1321 36 100.0 30 .................................... AAATTACTTAACAGATTTGCAAAAGCTCGA 1387 36 100.0 30 .................................... AAAGTATCTGGAACTCAAGAAGTAAATGCT 1453 36 100.0 30 .................................... ATGAACTTTCTTTTGCTGATGGGTGACTGT 1519 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 25201-24174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEO01000027.1 Streptococcus mutans strain 503_SMUT 185_25200_314780_155+,106+,60+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 25200 36 100.0 30 .................................... AAATAACATATAACTTATATTAATTTGGAA 25134 36 100.0 30 .................................... AAATGTTGTTTTAATCGGTGATGTTGGCGT 25068 36 100.0 30 .................................... TCATGGTTTGTTGATACTTGACATATTCAA 25002 36 100.0 30 .................................... CAATACTTGGGAAAATTGACCACACAGGGT 24936 36 100.0 30 .................................... CTTTAAGTTTTTTCTTGGAAGAAATGTACT 24870 36 100.0 30 .................................... AAATTACTTAACAGATTTGCAAAAGCTCGA 24804 36 100.0 30 .................................... AAAGTATCTGGAACTCAAGAAGTAAATGCT 24738 36 100.0 30 .................................... ATGAACTTTCTTTTGCTGATGGGTGACTGT 24672 36 100.0 30 .................................... TGTCTTATCGGTATTTTCTTGAATTTCTCT 24606 36 100.0 30 .................................... CAGACCGTGTCAACTGCGAACAGTTGCCGT 24540 36 100.0 30 .................................... TAATTCGTCAAATTCTCCACCAAGAAGTGC 24474 36 100.0 30 .................................... AAACACCTGAATCAGAAGATGCCGAATAAT 24408 36 100.0 31 .................................... CAATTTTATCGGTTCCACCTAGACAACCAGA 24341 36 100.0 30 .................................... ATCTGAGATTTAACAAAATCATCTTATCAA 24275 36 100.0 30 .................................... ACTAGCAACACAGCACCTTTCAGCGCAAGT 24209 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [24194] ========== ====== ====== ====== ==================================== =============================== ================== 16 36 98.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : GCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTGTTGACGTCCTAAGGTTTGATACAGATCTTTAGCTTTTATCACATTGTCCCAATGAATAATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 631-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEO01000012.1 Streptococcus mutans strain 503_SMUT 167_143235_1768240_60+,...,105_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 630 36 100.0 30 .................................... CAATTTTAGACGCTCGTACTGATGACTCAT 564 36 100.0 30 .................................... AAATAACATATAACTTATATTAATTTGGAA 498 36 100.0 30 .................................... AAATGTTGTTTTAATCGGTGATGTTGGCGT 432 36 100.0 30 .................................... TCATGGTTTGTTGATACTTGACATATTCAA 366 36 100.0 30 .................................... CAATACTTGGGAAAATTGACCACACAGGGT 300 36 100.0 30 .................................... CTTTAAGTTTTTTCTTGGAAGAAATGTACT 234 36 100.0 30 .................................... AAATTACTTAACAGATTTGCAAAAGCTCGA 168 36 100.0 30 .................................... AAAGTATCTGGAACTCAAGAAGTAAATGCT 102 36 100.0 30 .................................... ATGAACTTTCTTTTGCTGATGGGTGACTGT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGCGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATAAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //