Array 1 1174-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGI01000272.1 Salmonella enterica subsp. enterica serovar Ohio strain BCW_2160 NODE_272_length_5815_cov_4.25296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1173 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 1112 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 1051 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 990 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 929 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 868 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 807 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 746 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 685 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 624 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 563 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 502 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 441 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 379 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 257 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 196 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 135 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 74 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GCGTTTCTGGCGGGGGTAGGGAACGCCCAGAAAGTGTTCCAGATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8310-6815 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGI01000133.1 Salmonella enterica subsp. enterica serovar Ohio strain BCW_2160 NODE_133_length_10036_cov_4.00933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8309 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 8248 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 8187 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 8126 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 8065 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 8004 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 7943 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 7882 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 7821 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 7760 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 7699 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 7638 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 7576 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 7515 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 7454 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 7393 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 7332 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 7271 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 7210 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 7149 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 7088 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 7027 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 6966 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 6905 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 6844 29 96.6 0 ............T................ | A [6817] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //