Array 1 630-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000105.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 629 28 100.0 32 ............................ TGTTGGTTCTGTTAAAGATGGTGCAGGAAATA 569 28 100.0 32 ............................ TTATCAAAACTTCAGTTGCAGCAACGATTGGC 509 28 100.0 32 ............................ AGCGTGGAATTGGTGGGGTTAAATTGGCGTTA 449 28 100.0 32 ............................ AAACGAAAGATTTAATAAAAATAGCGCTTATT 389 28 100.0 32 ............................ GTCCGAGTGACGAATCATTTTGTGCAGCGCAT 329 28 100.0 32 ............................ AGTGGGTCATTAATTGTCCGTACTGGAGAACT 269 28 100.0 33 ............................ TGTTGTAAGATATATAGCCATTTTAATTAACCT 208 28 100.0 32 ............................ TTGTTGAAGATGGTGATAGACCATTTAACTAC 148 28 100.0 32 ............................ AGAAAATTTAGGCAATAAAAAACCCCGAACAA 88 28 100.0 32 ............................ GCAAGCGATTACGCAGAGCAATATTATTCTCT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : CTTAGAAAGCTTGCCTGCTGCAACCGCGACAGGTGTAAC # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 56909-55021 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000021.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56908 28 100.0 32 ............................ AACTGTACTTAGGTATTCACGATACTCTTCTT 56848 28 100.0 32 ............................ GCAATAGGAATACCTTTGGAACGTGCATCGTG 56788 28 100.0 32 ............................ TGATGCCACAGCGAAAATACACACATTTGAAT 56728 28 100.0 32 ............................ TACCACAAATCTTCACTACATAGACCCATACG 56668 28 100.0 32 ............................ TAATTTATCACCCTTGCTCAAGACTGATTATG 56608 28 100.0 32 ............................ TTGTCCCTTTTTCTGAAAATCTAGATACTAGA 56548 28 100.0 32 ............................ GATGTTTATACATACACATATTCGGCGTTTAG 56488 28 100.0 32 ............................ TGAACACATGCTGTATTAGAGAAAGTCAGTTT 56428 28 100.0 32 ............................ TGAAAAACGTAATGCAGAACTCGCCCAGACAA 56368 28 100.0 32 ............................ ATGTATTGAATAACCTCAGCAGCAGTACCGCC 56308 28 100.0 32 ............................ AATCCCTTCAATGACTTTTGAGACAGGAAACC 56248 28 100.0 32 ............................ ACCAGTACCAGATGTACCTCCATTCGAACCTG 56188 28 100.0 32 ............................ TGTTCCAGTACCAGTTCCTGAACCATCGCCAC 56128 28 100.0 32 ............................ ACGACAATGCATTTTTCATTGTCGATCTGCCA 56068 28 96.4 32 ....................T....... GTGCGCTAACAAGTGTACAGATTTTAAAGATG 56008 28 100.0 32 ............................ ACATGCGAGCAAATCATCTCTACGCTTATAAA 55948 28 100.0 32 ............................ TGAGAAGATCAAACCAAAAATGATACCAACCC 55888 28 100.0 32 ............................ TATTTAGGTGCTGCATTCATCATTGCAGGTGT 55828 28 100.0 32 ............................ CATATTCGGCGTTTAGTCGAAAAACACATGCA 55768 28 100.0 32 ............................ ATTGCATTGAAAACATATTTTGTTGTCTTTTT 55708 28 100.0 32 ............................ AGTTCCAGAATTACTATTTCCGTTTTTAGCAA 55648 28 100.0 32 ............................ TTTGGCAATGTTAATAAAAGTATTTCATTTCA 55588 28 100.0 32 ............................ ATACAACAGTCCTAATCAACCCCAATATACGG 55528 28 100.0 32 ............................ TGAAGATAATGAAATTGACTGTAGTGATCTAA 55468 28 100.0 32 ............................ ATCCAAAGAAAAAGCGCCTGAGCCTGAAAAAG 55408 28 100.0 32 ............................ TGTCGGGGGACGTTCGCAATAAGTACCTGTAC 55348 28 100.0 32 ............................ ATATTGGTCAACTTTATAAGCTTTAACTTCGA 55288 28 100.0 32 ............................ TAAATTTGAATTCGAATTTATAAGATGGAGTT 55228 28 100.0 32 ............................ GCTAGCCGCATTGACACCAGCAACTGCTGAAA 55168 28 100.0 32 ............................ AGCAAGACCAAACACGCCGCCACGAATTAAAT 55108 28 100.0 32 ............................ TTTAACATAAACAGTTCGACCATCCCATTTCA 55048 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.8 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : CATACGCCACTTAGAAAACCAAGTTTATTGACCAACTCAAGCGAATTTA # Right flank : TGCAAACGATGTGTAAGAGCTTAAGCTGATTGATTCACGAGAGTAGAATATGGAATCTAATCGCCCGTAAAAATGAGTTAAAAAGAAATAATATAAACAAAAACGAACTGCTTCTGGCGAAACAGTGCGTTAGGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGTTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGATTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGATTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAACAGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1070-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000025.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1069 28 100.0 32 ............................ TCACAAACAGTTGGCGCCCATGAACAGAAAAC 1009 28 100.0 32 ............................ GCCGTGAAAGGGCGAGTATCTTCTTTATCAAA 949 28 100.0 32 ............................ TTTAGATGCCCTGCTCAATGCATCTGAACACT 889 28 100.0 32 ............................ TAATGATGATACAAAAGTTGATATAACTGATT 829 28 100.0 32 ............................ ATCAGTGCGAAATGCAGGAGGGCGACCGCCAC 769 28 100.0 32 ............................ TTTTTCGTAGACACGGCAGAACTTGGAACTTG 709 28 100.0 32 ............................ AGCAGCAGCAGTAGTAGCTACTTGAGCGTTTG 649 28 100.0 32 ............................ GACGGTTGGTCGTCTCGACGTTTAAACCCTGC 589 28 100.0 32 ............................ TGATCCCGTTAGGCATCAAAGTCTTTAAATAT 529 28 100.0 32 ............................ TGAAAAAGCAGCAGCACATTTTAAGTGGCTAA 469 28 100.0 32 ............................ ATTCGCAGTTATCAGCAGCCCAATCACAGAAT 409 28 100.0 32 ............................ AAGAAAACCAATCAGTTACTTTATCCCAAAAG 349 28 100.0 32 ............................ TATAAGTTCTTTGAGGTACACAATAGATGACT 289 28 100.0 33 ............................ TATGAAACAGTTGTTCTTCATGGTGTTACATCA 228 28 100.0 32 ............................ TAAAGAACGTGTTACCAATTGTCTAAAAAGAC 168 28 100.0 32 ............................ TTGCGCTTCAACCATCGCTTTACAATGTGTCG 108 28 100.0 32 ............................ AATTGAAGCCTGTTGTGTAACTTTCATTCACG 48 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : TGGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATGTCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAAAACGTCGTGGAATCTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGACAGAGACTTTTGAACCTTATATTAATATGAAAAGTCAAACTAATGATATGAACTTCCGTTTGATTATTGGAAAAAGACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGAGTTTTAACCCAATATTTTTTAGACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTACATACTTTTTAGGGTTAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTATT # Right flank : ACAACAGTACCCATTTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11-3584 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000061.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 ............................ GATGATTAAAGATTTAACTATTCATCGTCATA 71 28 100.0 32 ............................ GAATCCTGAGTGATTAACCACAAATCTTTATT 131 28 100.0 32 ............................ TGTTTGCGATGCTCTTAACTTCTTTAAACCTG 191 28 100.0 32 ............................ TAAGAAGGCGCTTATTAGAATTTGATTGCCAG 251 28 100.0 32 ............................ TTGTAAGCATTCGCCAGCTTTATGTCATAATT 311 28 100.0 32 ............................ ATGCTTTACAAAGCTAAGATTGATCGTACAGC 371 28 100.0 32 ............................ TTGTTAAAGCAATCGCCGCACATGGGTTGGGT 431 28 100.0 33 ............................ TGATTGGCTTTAGATAATGCGATTAGCTTTTGC 492 28 100.0 32 ............................ AATACCAGAAGATGGATTATCAATCCAACGAA 552 28 100.0 32 ............................ TTTCAGCAGTTGTATCCTTTACTGCTTTATAA 612 28 100.0 32 ............................ ATCCACAAATCACTAATACAAACATCACTAGA 672 28 100.0 32 ............................ CTGCAAACGTCCAAGCATCTGATCTGAACGCT 732 28 100.0 33 ............................ ACGTTCATAAAAGCGCATAAACTTGGAACTGGA 793 28 100.0 32 ............................ TCAATTAGCTCCTAAGCTTGAACCTAAGTATT 853 28 100.0 33 ............................ AATCATACCCATCCAGATTATTCTAATCCTCAA 914 28 100.0 32 ............................ GGATAGCCATTTTTTACAATCGGCCTCAGATA 974 28 100.0 32 ............................ TTATGCAAGATAGAGATTTACCTTTTCAGGAA 1034 28 100.0 32 ............................ AATGTGCGTGACAAAGCGCCGATTCACATCGA 1094 28 100.0 32 ............................ AGTACACTATTTGGCAAAGCTGCTGCCGAAGA 1154 28 100.0 32 ............................ TCCAACACTGCATCAGTATGTGCATCAGCAAC 1214 28 100.0 32 ............................ TAAATATGATGAAGATGCCAATACTTTGACTT 1274 28 100.0 32 ............................ AAAATCGCTTTGGACAAACTAATTATTATCAA 1334 28 100.0 32 ............................ GCAACTGGATATTTGTACGCGCGTTTCAACAT 1394 28 100.0 32 ............................ GACTTGCAGCATCGGGTCGCTATAGCCAACTT 1454 28 100.0 32 ............................ CCGTGCTTTAGGTAGACGCCTAGCAAGTCGCT 1514 28 100.0 32 ............................ TGTATATTCCGCAATTGCGTTGATCGTGTCAT 1574 28 100.0 32 ............................ TTGGCAAAAGACATACAGCTACACGTGACACT 1634 28 100.0 32 ............................ TCGTTGAGCGGAATTAATTCAAAATATTCTTT 1694 28 100.0 32 ............................ TTTCAGCCGTAGGTGCGGCGACAGTTCCTGCA 1754 28 100.0 32 ............................ GTTAATTAATAAGGCGATAGCGTTATGACTGA 1814 28 100.0 33 ............................ GTTAACTCTTTCTTAACGTTAAATACTGCTGCT 1875 28 100.0 32 ............................ ACCAGAAATGGAAGCTACGAATAAAAGTGCTG 1935 28 100.0 32 ............................ GTTTGATTGGCGAGATCTGCCGAATGGTTCTG 1995 28 100.0 33 ............................ GTTTAACGGTGCATTGCAATATATTTTATTAAT 2056 28 100.0 32 ............................ ATTTGTTGATTTAACTGCTGAACCATACTCAA 2116 28 100.0 32 ............................ TTATGGTTGGCAGCAAAAGAAATCAAACAGGC 2176 28 100.0 32 ............................ CTTGCAAGAATAGTCAAATATAAGCTGCCCCA 2236 28 100.0 32 ............................ TGTTCGATCAGCTTCTTTTTCCAGTGCTTCAA 2296 28 100.0 32 ............................ AATTAAAGGCGGGATTCGATGTTGGTATGTGG 2356 28 100.0 32 ............................ AGACTGGAGGCGTCACGGTCATTCTAATTTCT 2416 28 100.0 32 ............................ TGCTGCGGTGGTTCGATTCTTTTTCCCATCTG 2476 28 100.0 32 ............................ TTTAAAACCTAGCAGCTAACAATTAGTAACCC 2536 28 100.0 32 ............................ TCTTTCTCTGCTAAAAAAATAAGAGCTAGTTC 2596 28 100.0 32 ............................ CGCCTCGCTAGCTGCTGCGCCCGATGAAAACT 2656 28 100.0 32 ............................ TGACGACCAGCCTGTCATTTCAGCCATGATCA 2716 28 100.0 32 ............................ AAGCATTGAAATTAACAGCGGAACAATCACGC 2776 28 100.0 32 ............................ TGAACCGGTCAAGCTCAGTGAAAAAGAGGTGT 2836 28 100.0 32 ............................ TAATGCATCGCGCAACACACTTAACTGCGCTG 2896 28 100.0 32 ............................ ATATTGAGGATTGATTCATGAATGCAATTATT 2956 28 100.0 33 ............................ AAAGATTATTAATAAAGTCTATCTGGTGTTCGT 3017 28 100.0 32 ............................ CAACATCGTGTTTTAAATCATGGATATGAACG 3077 28 100.0 32 ............................ ATATGCATAAATGCATGCATGTTGATAATGGA 3137 28 100.0 32 ............................ TAATAGATCAAGACTATTATCGACTGGACAAT 3197 28 100.0 32 ............................ AGTAATTAACGCTGGGCTAGATAATGTTTCAC 3257 28 100.0 32 ............................ TAATAGATCAAGACTATTATCGACTGGACAAT 3317 28 100.0 32 ............................ TAATTATGCGATAACCAATATAAATAGAAATA 3377 28 100.0 32 ............................ TGTGGCTGAACGTGCAACACAAGCAGTTCAGC 3437 28 100.0 32 ............................ TGATCAAACTCTTGACCAGCCTCATGATTCTC 3497 28 100.0 32 ............................ TACAAAAATGACCAAACCATCCGCTTGCCTGC 3557 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 60 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : ACCCGTATGAG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6197-7185 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000027.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6197 28 100.0 32 ............................ ATCTCTTGGGGTGCTGCCTGCCCTGCCGATGT 6257 28 100.0 32 ............................ CTTAAATATTTGATCTATTTAAATATTTTTGA 6317 28 100.0 32 ............................ CAACAGCAGCTGTCAACCTTGCTTGGGATCGT 6377 28 100.0 32 ............................ GTTCGTAAAAACAAACTGGTCAAGTACATTGA 6437 28 100.0 33 ............................ AGTGCAATTTACATTGGTGTTTTCAAATTTGGT 6498 28 96.4 32 ....T....................... ATGATAAGCAATCAAGTCACGATCATTGGGTT 6558 28 96.4 32 ....T....................... GATCAAACAGGGCATGAAACGTCCGGTCATGG 6618 28 100.0 32 ............................ GAAAGCTTGAGTGAATGCAAGAAGCGAAAGGT 6678 28 100.0 32 ............................ TAATAAACCATTTGAAAACAGTGATATACAAA 6738 28 96.4 32 .T.......................... TGGTGAAACCAACATGTTATTTTTTGATTTTT 6798 28 96.4 32 ..........A................. AGTCCATGACATCTCGGCTTTAATTTAAGCCA 6858 28 92.9 32 .........TA................. TGTTGATAAGCCTTAGCCTTCGCTTCTTGATA 6918 28 92.9 32 .T........A................. TTTACTCATACGAATACGTTGAAAAAGGCGGT 6978 28 96.4 32 ....................C....... AACATGCGGAAAGTTTAAACATCCGCCTCCAC 7038 28 96.4 32 ..........A................. AATCAACACAGATAATTTGCTTTTGCTCAACT 7098 28 96.4 32 ....T....................... ATGTAACACCATCAAAACTAGCAACAATACCC 7158 28 78.6 0 .T..............G..A....TTT. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.4 32 GCTTCCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCACTGGGTAATAGTTTTGCATCCAAAATCTCTGCATCTGCCGCCCACTCTAACGAAAGTGTTTGTAACACCAGTGCTGAACTTTCTGCGAAATAGTCTTCGGTTCCCTGACCTAAATGAGCATCATATTGACGTAGTGCAGTCACACCGAAACGAATGAAATCACGAATCGTTGTTAGGTTTTCTGCTGCTTCCTGTAATTGTTCAGGGTGAATAGTCGGTTGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAGCGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACCCTTTAATAATATAATAAAATCATAAGCTTATGATTTAACTTGTTTTTAAAGCATAATATTAAATTATTAAAATAACTTATTGTTATTAAATGATTTATTAATAAGAGTTTATA # Right flank : ATTTTCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGCATTCAAGCTATGGCATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAATTTAATATTTGCTGATATCAACTCCAATTTTAAAACGCAAAACAGAAAATAGAAACCATTGAATAGACTTGTTTCATAAGTCCCTTTCATTTCTGCCTATGCGAGAGAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTTGCTTATTTTCATAAAATCTTCTACCAATATATAAGCATTTTAAAAAGATGAGCTTAATAAAATGACAAATCCAGATATTCAAAGTGTAGAACTCACAAAAGCCTATCGTTTACTTAATCATGGCCCAACTGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCTATCGCATAGATAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4-3396 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000062.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 32 ............................ GCAAACAATCATGCGAACGGCTGATGAAGTGC 64 28 100.0 32 ............................ ATCAGAACGTGTTGAACCGATAAAACAGTTGC 124 28 100.0 32 ............................ TCGATTTTGGAACTTTGGCGCATACCTTATTT 184 28 100.0 32 ............................ TTGCCGAGTCGGTAATGAGATTTTATTCATTC 244 28 100.0 32 ............................ AATGTACGGACGTTTGCAGTCTGAGTACCTGA 304 28 100.0 33 ............................ AGTTGCCGATGCTGCGCCACGGTTTCCAGTTGC 365 28 100.0 32 ............................ TTTACACCGTTTACTCGGCTAAAACGCCATGC 425 28 100.0 32 ............................ AGTTGCCGATGCTGCGCCATATTCACCAGTTG 485 28 100.0 32 ............................ ATAAAAGTTAAAGCGGGTAAAGATAATTTTGG 545 28 100.0 32 ............................ TTTTAAGGAAATTACAAAGCCGGCAGCACCCC 605 28 100.0 32 ............................ ACACTGGGGTAAATCAACATCGGCATGGTTTG 665 28 100.0 32 ............................ AGACACAACTTAGCCAAAAGCAAATGGATAAT 725 28 100.0 32 ............................ AATCGATCATTCGAGCTAATGTCGGATACGCT 785 28 100.0 32 ............................ GTAAAGCAGCGGGTGACTTTGAAGATCAAAAG 845 28 100.0 32 ............................ GATCGCGCCTTGCTCTTTCTCACGATCGGAAT 905 28 100.0 32 ............................ CAATCAAAAATCATCTTTGCATCTGCGGGTAA 965 28 100.0 32 ............................ CGCTGCTTTACGGATGCCTGTTACTGTCATAA 1025 28 100.0 32 ............................ TTAATCTTGTAATCAGTAGACTTTTTACCGAT 1085 28 100.0 32 ............................ TGTTACTGTCATAATTGGTTGTTGTGATGTGT 1145 28 100.0 32 ............................ TGTTTGTTCTACACGCCAGATCAACTGCTTAA 1205 28 100.0 32 ............................ ACGACCATTAATCATGATCAAGATTGTATTTC 1265 28 100.0 32 ............................ ATAATGTTGCTTTACGCGAGCAGCGTTTTCTT 1325 28 100.0 32 ............................ TAGAAATTTAGAAGCAGAGCCATAATGTTGCT 1385 28 100.0 33 ............................ TGTTTCTAACTGTACACCACTTGTTGAAGGTCA 1446 28 100.0 32 ............................ TAAACCATATTTTTTAACTGCACCTAGAAATT 1506 28 100.0 32 ............................ CAACCAAGCTTTTTAAATCCGCTGCAATATTA 1566 28 100.0 32 ............................ ATTGAACATGCACAAAAAACCTTAGCTGATGG 1626 28 100.0 32 ............................ ATCAGTAGTGTCACCAGCCACGGCAACTCGAA 1686 28 100.0 32 ............................ AGTGCAATGAGCGCAACAGATACAGCTGATGT 1746 28 100.0 32 ............................ CTTTGAAAACTACACCCGTACGGCACAAATTC 1806 28 100.0 32 ............................ ATGCGCAAGCCCATCGATGAGTCAAAAAGTGT 1866 28 100.0 32 ............................ GCAAACCAAACGTACAAGCTTTACAAGGGGTA 1926 28 100.0 32 ............................ ACCGTAAGGTGTTTTGATTTTTGCAACTGATC 1986 28 100.0 32 ............................ ACGAAGCTTTTGTGCCAGTGCAATGAGCGCAA 2046 28 100.0 32 ............................ TTGTGTTCTTGCTGAGAGCCAAGCCACAAGGC 2106 28 100.0 33 ............................ GATTTTTCGGAATAAATTCCGATTATCAGGAAT 2167 28 100.0 32 ............................ ATAAGGATCCTTGTTATTACATTGCCCCTCAA 2227 28 100.0 32 ............................ AAACAGCGAAGCCTATTAATCCAAAGAGAATA 2287 28 100.0 32 ............................ TTTCGCAATCAAACGTGCATGGGGTCAAGTCT 2347 28 100.0 32 ............................ ACCCACAGTTGATAATTCAGCAACTTTATTAA 2407 28 100.0 32 ............................ GTTGCAAATGCATATGTTTTTCGACTAGACGC 2467 28 100.0 32 ............................ TGAGAGACATACGGCAAAATAGTACCCTGTTG 2527 28 100.0 32 ............................ TGCGTAGGAACATACGTTCCTGTACTCGGTAA 2587 28 100.0 33 ............................ ATGCAAATTTAACTTAGAGTTTGAGTTTGACTT 2648 28 100.0 32 ............................ GAAAATATGTTCTACCGTAGATTCGACCAAAA 2708 28 100.0 32 ............................ ATGTCATCATACTGCCGAAACTGCTGATGATA 2768 28 100.0 32 ............................ TAAAGCATCAGAGATTTGTTGCTTGAATCCAG 2828 28 100.0 32 ............................ TGTCGCTCCATCAGTATAAAGTAGCGCATTGA 2888 28 100.0 33 ............................ ATGACTTCATGGAAAGTTGCTGTTGTAACTTTT 2949 28 100.0 32 ............................ GCAGCCATTAATCCAGATATTCAAACTGTTGA 3009 28 100.0 32 ............................ TAACAAATTGAATCCTGACGTTTTGGCATCGG 3069 28 100.0 32 ............................ GCTACCTGAACCATTTCCGCTACCAGAACCGT 3129 28 100.0 32 ............................ GTTGCAAATGCTAAAAGTGTTGCACGGGCAGA 3189 28 100.0 32 ............................ ACTTGCTGGTGGAGCGCTCACGGGACTATTGA 3249 28 100.0 32 ............................ TTATCAGGATTACGGCCTTGTATTTTAAACAT 3309 28 100.0 32 ............................ TTATGCAAGATAGAGATTTACCTTTTCAGGAA 3369 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 57 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : CTGG # Right flank : AATGTGCGCGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1835-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000072.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1834 28 100.0 32 ............................ TTGCATTGCGGCAGTCATAAACAATGAATAGT 1774 28 100.0 32 ............................ AATCAAATTCCGAGTTAGTGATTGACTTATCC 1714 28 100.0 33 ............................ TACAAAAATGACCAAACCATCCGCTTGCCTGCT 1653 28 100.0 32 ............................ GCTTAGGGAAAGCTAATGGATCAGAACAAGTG 1593 28 100.0 32 ............................ AGTTTGTCATGCTGATCTTTCAACACGTAATT 1533 28 100.0 32 ............................ TACAACACCCGATACATCTACCGCAGCATTTG 1473 28 100.0 32 ............................ ATAAGGATCTTTATTATTGCATTGACCCTCTT 1413 28 100.0 32 ............................ ACAAATCAATACATTTATTCTTATGTTTCAGC 1353 28 100.0 32 ............................ GCTCGAAGCTGAAATTGAATTTGAGATGGTTA 1293 28 100.0 32 ............................ TTTTGAGCCAAATTTTAAGATCATGATGTACT 1233 28 100.0 32 ............................ ACATGGACTAAGAACAATGCACTCTTCATTAA 1173 28 100.0 32 ............................ ATTACTTAGACTCCTCAGCTTGGTTTTGCTTA 1113 28 100.0 32 ............................ AGACAAAAGCCATTGTTTAAGCAGTAGTCCGT 1053 28 100.0 32 ............................ TGTTAAAAACGGTGAGGATTCAATGTCTGTTT 993 28 100.0 32 ............................ TTGCATTGCGGCAGTCATAAACAATGAATAGT 933 28 100.0 32 ............................ ACGAACACAGGCAGGACAAGACTACATTCAAA 873 28 100.0 32 ............................ ACTAAAAATAAGGTGCGCGTTGCTTATACTAA 813 28 100.0 32 ............................ ATCAACCCAAACAACATCTTTTACTACACCTA 753 28 100.0 32 ............................ TTATGCGCCAGAACTGACACAAGGGCAATTAA 693 28 100.0 32 ............................ AGTTGGACCAGCAATAGCTAGACGCAACTTAG 633 28 100.0 32 ............................ TCATTCCCAATAAATCAGGAAAATAAAATGAC 573 28 100.0 32 ............................ AAAGAACCTCAAAGCATGATCCTGTTTTAGTG 513 28 100.0 32 ............................ TCACATTTAGAAATATGAAACGGCAAATATTG 453 28 100.0 33 ............................ ACCAAAACGAGTGCATGGAATTTCAAAATTAAT 392 28 100.0 32 ............................ TTCACTTTGGACGGCGTAGGGGCTTCATATAA 332 28 100.0 32 ............................ CGACCCATCCAAAGCCGAACAAACAGTGGGGC 272 28 100.0 32 ............................ AGGATTATTTAGTACGAGCGCAAAAGAAAGGC 212 28 100.0 32 ............................ TCGCAGTTCTGAGTGATGCACTGTGCTTCTCT 152 28 100.0 32 ............................ TATGCGTCGGTCAAGTCTGAAATCGCAGGAAT 92 28 100.0 32 ............................ ATTGTGAATATTGAGATGAAGTAGAGACTCAA 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : AAATACAAAAATGACCAAACCATCCGCTTGCCTG # Right flank : ATACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7-1055 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFA01000090.1 Acinetobacter ursingii strain TG29426 Acinetobacter-baumannii-TG29426_330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 ............................ CAATTCGTCTGGTGTAACAACCCCATCTTCCA 67 28 100.0 32 ............................ ATTTGTCGAATGATGAGCTTACACAGCTTGCA 127 28 100.0 32 ............................ CTAAAATGATGTATGCAGCAGCGAAATAAGCA 187 28 100.0 32 ............................ GTCACGATCACCGCTTGAATAATTCAGGTTTA 247 28 100.0 33 ............................ ACACCGCCATTTGATAAGCCCCTTGATTCTTAT 308 28 100.0 32 ............................ TGATAATTTTATCAGGTTTTTTTATTATAAAA 368 28 100.0 32 ............................ TCAGTAAAAGTTGATGCTGCGGTTGGTAATTT 428 28 100.0 32 ............................ ATAAAGGAAATCAAATGAACATGTTGGCTAAA 488 28 100.0 32 ............................ AATGGTATGAATTGATCCAATATCTGCTAAAT 548 28 100.0 32 ............................ TTTTTCAACGTCATATACAAGTGGCGAAAAAG 608 28 100.0 32 ............................ ATAGGAAAATGAATAAGATTTACCTAATAGAT 668 28 100.0 32 ............................ TGAACCGCTACCAGAGCCGTCACCATCACCAT 728 28 100.0 32 ............................ GCATTTAACATCAATCTGCATTATACGAACTC 788 28 100.0 32 ............................ AACGCTTGACCCAACTGATCAAAGGCGAATTT 848 28 100.0 32 ............................ TTACTGGAGAAACTTTCACACATTCAATGAAA 908 28 100.0 32 ............................ GCTTAAATTGCTCCAAGGTCATAATGTTTATG 968 28 100.0 32 ............................ AAGAACGTATCCAAAAAATATTTGAACAGAAT 1028 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : GCTGATG # Right flank : AT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //