Array 1 73614-75132 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJT01000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain KW14_3 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 73614 33 100.0 36 ................................. GCTTCATCCGCCTACTACACCGCACTTAAGCAATCA 73683 33 100.0 33 ................................. TGAATTGCTGGGCGATTTGAAGACCACACTGGT 73749 33 100.0 35 ................................. AAACACTGCTCCAGGATTACGACCTGGAATGTGAC 73817 33 100.0 33 ................................. ATCGACCTGAAGCATGAAAACAAGCTGGTTATC 73883 33 100.0 34 ................................. GGGAAAATACTTGACTACAAATCCGATTTGCCCT 73950 33 100.0 34 ................................. GTCATGCTCACGTTGGTAAGAGTCATTTGCAATA 74017 33 100.0 37 ................................. CCAGTTAAAGCTTCCCCAGCAAAAGGATCACGCTTCC 74087 33 100.0 36 ................................. TGTCACCTTGTCGATGAAGTCATGGATGTCTTTAGC 74156 33 100.0 35 ................................. ATCGTCGTCACCATCCGTCATGTCGTCAATGATAA 74224 33 100.0 34 ................................. CCTACTTCCTTTTTACCACGCTTTGGGGGATCAC 74291 33 100.0 35 ................................. GCTGCTATAGTCATCGGTTGATACGTACCGGCCTT 74359 33 100.0 34 ................................. GATGGTGGTCTACAAGGCTGACGAAAAAAGCCCC 74426 33 100.0 36 ................................. AATTAATGTTGCTTTAATAGGCATTGATGCGGCTAA 74495 33 100.0 35 ................................. TACTCTCGTGTCCTGCGTGGCGAAGAGACGGAAGA 74563 33 100.0 36 ................................. GTTAACGTAGGCTCCGTAGGCCGTGAACCCACGGGC 74632 33 100.0 34 ................................. TTCGTGAAGGCTCCATTGCGGTCCAAATTTCAAG 74699 33 100.0 34 ................................. TATAGGCCTTAAGGCTTTAAACAAGTTCCTTAAA 74766 33 100.0 33 ................................. AGCATCGACTCAAGCAATGGCATTGAGCACTGG 74832 33 100.0 34 ................................. TTCTCCGACCAGAGCGTGTTGTGAGCGCTGAATA 74899 33 100.0 34 ................................. TTCTCCGACCAGAGCGTGTTGTGAGCGCTGAATA 74966 33 100.0 35 ................................. TCTGTGCTAAGGCGGTAGGATGCCCAGTAGATCAA 75034 33 100.0 33 ................................. TTACCTTTAATTGTAGCTACCTTGCTCGTCTTC 75100 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 23 33 100.0 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTGCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATAAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTGTTTTTTTGTAGTCTTGAATATAAAATTGCAGTTGTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 980-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJT01000078.1 Lactobacillus delbrueckii subsp. bulgaricus strain KW14_3 Scaffold78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 979 33 100.0 33 ................................. AGAGGTAGCCAAGCACGCCACCGACGGCAGAGA 913 33 100.0 33 ................................. AGCCAAGAACCTGACCTCAGGCTTGAGCACTCT 847 33 100.0 33 ................................. GCCATTTGACAGAGTTGATAGTCCAGTAGTCCA 781 33 100.0 34 ................................. TCGGCAAGTTAGTAACCAACCAATTAATCGTGCT 714 33 100.0 33 ................................. TAGTTACCCGCAGAAACTCAACCAAGCGATGAC 648 33 100.0 34 ................................. ATGTCATTAAGGTCGGTCTTGTCTCCGATCTGAG 581 33 100.0 33 ................................. TGCGCATCTCTAGCGGCCTCTGAGGCACTCTGG 515 33 100.0 35 ................................. ACCAGCCATGCTTTATCAGTCATTTTGCTTGCCTC 447 33 100.0 37 ................................. AAGCTTGAAAGCACCGAAACCCTAGAAGACCAGTACA 377 33 100.0 35 ................................. CTTAGAGCCAGTTGCTACATTACCGTTACCGTTCT 309 33 100.0 34 ................................. TCTGGTGTCGATGTCCTCTGGCACGCTGTCCAGC 242 33 100.0 34 ................................. TCATTAGTAAGCCCTCCTTGCATAACCACATCAG 175 33 100.0 35 ................................. TTGCGTATAGACAGGCAGGCGGACGGTGTTGTCAG 107 33 100.0 35 ................................. TCTGTGCTAAGGCGGTAGGATGCCCAGTAGATCAA 39 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 100.0 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CAAACTC # Right flank : TTTACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37176-35540 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJT01000018.1 Lactobacillus delbrueckii subsp. bulgaricus strain KW14_3 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 37175 30 90.9 34 ---.............................. GCCTTGTGATGCAAAAAGCGCATGAGCAAACTCT 37111 33 100.0 33 ................................. AGAGGTAGCCAAGCACGCCACCGACGGCAGAGA 37045 33 100.0 34 ................................. GACCCCGCTGTAGAGCCTTACGGATAAACAGCAG 36978 33 100.0 35 ................................. ATTCTGTTGCGGTGACCAGGCATTGCGTATGCCGC 36910 33 100.0 33 ................................. AGGCTACAAGTGGCTTAATCACAAGCCTATCCA 36844 33 100.0 36 ................................. TATCGTAACAAAGGTGCCAATAACAAAAACTTTACG 36775 33 100.0 34 ................................. TTGATAGCACGCTAACCAGGCGGCAACGCTCATT 36708 33 100.0 39 ................................. CCAATTTGCTAGTTCACTGAATCAGATTCAAGTCAACCT 36636 33 100.0 33 ................................. CCACCATGCACCACATTAGCGCAGTAAAGCATC 36570 33 100.0 33 ................................. CCACCATGCACCACATTAGCGCAGTAAAGCATC 36504 33 100.0 34 ................................. AAAAATTTAACAGACGCAAACATCTTCCTTGCTA 36437 33 100.0 33 ................................. TTGACGGGGCGTCCTTTGTAGGGGTTGATTTGA 36371 33 100.0 35 ................................. AGTGCTAAAGTCTTCGGTCGATACATACCGGCCCT 36303 33 100.0 33 ................................. TTTTTAAGCCAGTGCTCCGGGCTGTCCGGGTTG 36237 33 100.0 35 ................................. TTGCCTGCTGAGTCAAACAGCTTTTGAACGGCTAC 36169 33 100.0 33 ................................. GGATCTTGATTGACTATTACATCAATGGCCTGC 36103 33 100.0 33 ................................. ATCATCGGCTGCGGTTTTGGGCCAGACGATCCA 36037 33 100.0 33 ................................. GTAATTGCTCTGATTACGATGAAAGAAAGCCAT 35971 33 100.0 33 ................................. TGTCGGCATCGGCAAGACAGTAGCTCTGCTGGC 35905 33 100.0 33 ................................. AAGGGACTGATGGGCGTGGCCAAGACAATCTCT 35839 33 100.0 34 ................................. TTGGCTGACACCCGCATGAGGGCGCCATTTTGCC 35772 33 100.0 33 ................................. GATTCCAGGCAATGGTTATATTAATCTGGTGAT 35706 33 100.0 35 ................................. GCCTTTTCTGAGGCCGGTGGTAGCAAGGAGCAGGA 35638 33 97.0 33 ................................G TTTGTACCGAGCCTTTTCCCGCTCCGTCATGGG 35572 33 81.8 0 ..........A...AA....T.....CC..... | ========== ====== ====== ====== ================================= ======================================= ================== 25 33 98.8 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : | # Right flank : ATCGCTTAGATATGTGGATGCTTGATAGTCAAATTCCACTAAAAGCACTCCCTCGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCTCTGGACGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //