Array 1 467286-466525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000003.1 Nocardia farcinica strain CNM20091955 CJ469_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467285 29 100.0 32 ............................. GGAACGTGATCACCATCAACGCGCTGGTCGCT 467224 29 100.0 32 ............................. CGCCCAGCGGATCGCCGACAGCCTGATATCGG 467163 29 100.0 32 ............................. GCCTTCGCGTCGGCGTGCTCGGTGAGCATCAC 467102 29 100.0 32 ............................. ACAACGTCCGCATCCGCCCCTCCACCAAGGAG 467041 29 100.0 32 ............................. TCGCCCGCCTGCACCTGGAGACGCGGAGCCTG 466980 29 100.0 32 ............................. GGCACCGGCTGGATTCAGACCGAGGAACAGGC 466919 29 100.0 32 ............................. GCCAGCTATGCAACTTCTATGCAATGCGGATT 466858 29 100.0 32 ............................. TGGGCGAGGGCGACGTGGTCGTATGCCCCGTA 466797 29 96.6 32 ............................A CGACCACTAGAACCCAAGGACACGCCGGTGGG 466736 29 100.0 32 ............................. GAGGTTCCGCTCAGCCAGCCCGACTTGTCCTC 466675 29 100.0 32 ............................. TCGCGCAGCGTGGCACCCTGCCCGGCGCGGCC 466614 29 96.6 32 ............................A GCGCGGCGGCCTCGGTCTTGCGGTGGCGTGTG 466553 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAGGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCGCTTCCGCGGTCGTGAAGACGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGCAGGATCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 475176-474478 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000003.1 Nocardia farcinica strain CNM20091955 CJ469_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 475175 29 100.0 32 ............................. AGGCGGTGCTCGAAGGTCGTGAAAACATTGCT 475114 29 100.0 32 ............................. GGCGGCGCCGCGGGCACCCGCACCCCCTCGAC 475053 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 474992 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 474931 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 474870 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 474809 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 474748 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 474687 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 474626 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 474565 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 474505 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGCCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAGG # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCCCATGCAGGGAATGTAGCGGTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 862-536 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000054.1 Nocardia farcinica strain CNM20091955 CJ469_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 861 28 100.0 33 ............................ CTGCCGCAGCCTGCCGGCGTGGACGATGGTGCG 800 28 100.0 33 ............................ CGTGGTGGCGAAGCAGGTCAACGCCCCGTCCCG 739 28 100.0 33 ............................ CCGACCCCGATGGGAACGTCCGAGCGGCGGCGG 678 28 100.0 33 ............................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 617 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [564] 563 27 85.7 0 ........A.T....A.....-...... | A [554] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATCCGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCGAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACAAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCCATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGTGTGGCGAAAGTGGTTCAGCGGCTAGCGTGCTTGGATGCCCAAGGAGTGCCTGCGCCAGCGCGATCGGTGGACGAGATCGCGACTTTGGCAATGTCTCAGCGGCGCATGTCTTAGATGCTGGGTGGGACGGACGAAAGCGGGGAAAAGGCGCGGTACTACCGCATGACAGCCATTGCGCGCTTCCATGACTTGGATGTGGTCCGGGATGAGACGGGAAGTCTGAACACCAACCGCCGGCGATCAACAGCGACCCGACGCGCGGGTAACGACCGATTGTGGCGAGGAGTTTCTCGCTCGTAGCGCGAGGACCTCCCGCCCGAGATTGTGCACCTGCTGGTATTCGGCCAAGTCGGCCATTAGTGGACCATCACAAGCTAAGGGCTGTCCCGTAAGTTGTTGAGCGCCAGCCGTTATCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3381-3110 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000054.1 Nocardia farcinica strain CNM20091955 CJ469_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3380 28 100.0 33 ............................ CTGGCCCACCGTCTGCTGCACACCTACCGCGAC 3319 28 100.0 33 ............................ CGGCGGGTGCCCCGGCCGATCCCTACTCGGCCG 3258 28 100.0 33 ............................ CGAGAGCGGCTCGGGTGTGATCGGAACGAGGAC 3197 28 100.0 33 ............................ CACCACCGTCGCGATCAACACCTCCGGTGAAAC 3136 27 82.1 0 ...T.....-.A..G...........G. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTTGTTGGGGAGGTGAGGAAGCGACTTAAAGTGAATGCAAAAGGCGGACGTTGGCTGAGGAGCTGCAGGTCAGGAAG # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCACTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGTCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACCGCGGTCAGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGCAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCGGCCCTGTGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 584-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000101.1 Nocardia farcinica strain CNM20091955 CJ469_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 583 29 100.0 32 ............................. GACGAGGTGTTGAGCCAGTTCGCTACCTATTT 522 29 100.0 32 ............................. AGGTCAGGGGAGGTGGGTGGGGGTTGGGTGCA 461 29 96.6 32 ............................T TCGCCTGCGCTACAGCGACTCTGAGCCGCTGT 400 29 96.6 32 ....................A........ CACCTCGTTCGGGTTCTGCGGGACGCTCATTC 339 29 100.0 32 ............................. GCGAAATCGGACTCCAGGAACGGCACCCCCGC 278 29 96.6 46 .........................C... CCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGAC 203 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= ============================================== ================== 7 29 94.6 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CAACCTCGCCCACGCCCGCTGACCCCAGCCAGGGGCAGGTCGTCATCGCCGGGTCGGACTTACGGGACAACCCTTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGCTCGCGAGTAGGAACGAGGCTACGACCGTGAACGGGTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTCGGTCGTGGGAACCTGTGCGGAGGCTCACGCGGGACAAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAG # Right flank : CGGTACGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1536-290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000073.1 Nocardia farcinica strain CNM20091955 CJ469_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1535 28 100.0 33 ............................ CCCGCTCCCCCTATCCGGCTGGTAACCGGATTC 1474 28 100.0 33 ............................ TCCGAGCCCGACCAACCCCAGGTCAGAGGCACA 1413 28 100.0 33 ............................ CGCATGGACCCCGGCCACATGCGCGGCTTCATA 1352 28 100.0 33 ............................ CTAGGCGGTCACCGTGTTGCTGGGTTTGAATCG 1291 28 100.0 33 ............................ CCGAATTGGGTATCGAAATGGTTTGCCACGTCA 1230 28 100.0 33 ............................ CGCGGTCAGGCTGGTGTTGATCTCGCTGATCTG 1169 28 100.0 33 ............................ CGCCTGCCTAGGGAGTCCGCCGAACATGACAAC 1108 28 100.0 30 ............................ CGCCAAACCCACCACCACCACCGCGGCGAC 1050 28 100.0 33 ............................ CGCCGACTCCTTGGACTCGACGTAGTTCTTCAG 989 28 92.9 33 AT.......................... GCCGAGGTCGATTCCGCGGGCGTCGGCGTAGGC 928 28 92.9 33 AT.......................... CTGCTCGACACCGCTTCGCGTGAGGCACCAGGC 867 28 92.9 33 AT.......................... CTTCCGCTTCTGACGAGCCGAACGCCGCTCGGT 806 28 92.9 33 AT.......................... CCCTTCGACCGGTCGGGCGTCGTCCTCGAGGAC 745 28 92.9 33 AT.......................... CGGGTTCACGGGCTGGGCGACCGGGAAGCGGTT 684 28 92.9 33 AT.......................... CACCGCGCCCCAGACGGACGCCCACACCCAGGA 623 28 96.4 33 .T.......................... TCACCCGGTCACCGTCCGCCACTCGGTGACGTA 562 28 92.9 33 .T............C............. CTCGCCAGCGTGCCCGCGAAGGTGGCCGATGCG 501 28 96.4 33 .T.......................... CGACGTCGAGAAGGCGCAGGCCCAGGTCAACTT 440 28 96.4 32 .T.......................... CGCGAACGGGCGCCGCCGTCGTCGGGGAAGAG 380 28 96.4 35 .T.......................... CCCGGTACCGCCGCCGCCACCCCCCCGCCCCCGCC 317 28 89.3 0 .T............C...........T. | ========== ====== ====== ====== ============================ =================================== ================== 21 28 96.4 33 GCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAG # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 164395-164788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000006.1 Nocardia farcinica strain CNM20091955 CJ469_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 164395 28 100.0 33 ............................ CCCGCGAAGCCTTCGCCGAGGCCGAAGGAATCC 164456 28 100.0 33 ............................ CGGGACCGACGTGGCGCGTGCCGAGGAATTCGA 164517 28 100.0 33 ............................ CCCCATGACCCCCACCGAGGTCGACGCCGCGTG 164578 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 164639 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 164700 28 100.0 33 ............................ CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 164761 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTTTTTGTTTTTTCTTGGGCCTTGTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCGTGTCGCTCGCTAAGGTTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTTGTTGGGGAGGTGAGGAAGCGACTTAAAGTGAATGCAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGTCGCCGCCGCTTGTCCTTGGGTATGTTCGCGCTGGCCGTGATCGTGTATCTGGCGATCATCCAGCTCGGTGGTCTGTTGATGACCGCGTTGACCGGTGAGGACGATTTCCTGTCCACGCGCGCGGTGTTCTACGGCATGATCATCCCCCTCGGTATCGCCTTGGTATTCACCTACGGGTTGATTGCCTATCTGGGATGGCTCCACCCGGTCTTGCATGATGATCGCTCGGTCCGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166494-166949 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000006.1 Nocardia farcinica strain CNM20091955 CJ469_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166494 29 96.6 32 ................T............ GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 166555 29 96.6 32 ................A............ TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 166616 29 100.0 32 ............................. TGATCCGGGCGATCCTCGACGCCCTCACCGGC 166677 29 100.0 32 ............................. TGAGCCGCGATACCTATCGAGCTACGTAGCCA 166738 29 93.1 32 ....................AT....... GAGAGTTACTGATCGGGATGACTTGAGGGTGG 166799 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 166860 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 166921 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 177909-178501 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000006.1 Nocardia farcinica strain CNM20091955 CJ469_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 177909 29 93.1 32 .......T....G................ AGGTGTCAACCGGGGCACCACACACCACAAGG 177970 29 96.6 32 ............G................ CGGCCCAATCGGGGCACCCAAGCTGATGTACC 178031 29 96.6 32 ............G................ GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 178092 29 96.6 32 ............................T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 178153 29 100.0 32 ............................. GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 178214 29 96.6 32 .............G............... GTGAACACGGTGACCGGCCCGTACCGGCTGTT 178275 29 100.0 32 ............................. GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 178336 29 96.6 32 .............C............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 178397 29 93.1 46 ..........T..............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [178402,178425] 178474 28 75.9 0 A.......G..A..T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 94.5 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGTTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGGTGGCTGCCGGCCCATACACGCCGGCGGATCTCGGTTGGCTTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 187685-188749 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000006.1 Nocardia farcinica strain CNM20091955 CJ469_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187685 28 96.4 33 .C.......................... CCGCGAGATGCTGGAGCGGCTGATGAAGACCCG 187746 28 100.0 33 ............................ GGCAATTTTGGTGGCGTGCTCGTAGTAGACCGG 187807 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 187868 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 187929 28 100.0 33 ............................ CCAGCCGCCGCTCATGATCGGCGAGGAACATCA 187990 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGACCAGGTGGG 188051 28 100.0 33 ............................ CACGGTCGCCCGAGCGATCAACGAGCTACAGAA 188112 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 188173 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 188234 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 188295 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 188356 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 188417 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 188478 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 188539 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 188600 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 188661 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 188722 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGCAGTCGCCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCCGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCTGCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 302333-302789 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000006.1 Nocardia farcinica strain CNM20091955 CJ469_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302333 29 100.0 33 ............................. TCGGGGGTGTCGCCGACGTCGGGGCCGTCAGCG 302395 29 100.0 33 ............................. CGCATGGCCGACCTCAACGCGCAAACCTCCGCC 302457 29 100.0 32 ............................. TCCACAGCCGCAGCGCTGAAATCACGCACCGG 302518 29 100.0 32 ............................. GGGGACACCCTCGACCCGGTGGTGGTGCCGTC 302579 29 100.0 31 ............................. GGTGACTGTTCACCGCGGTAGGGGGCGCGGA 302639 29 96.6 32 .G........................... GAGATGAACCACCCGACACTGATCACGATCGC 302700 29 100.0 32 ............................. GGGGAGTGATCCGGGGTTCCGTCATCGGGCGC 302761 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGACTTCGTGCGTCCAGGGGGTGCATGCGGTACACGTCCAGGACCGTGAGCGGGAACGAGGCCACGAGCGTCAACAGGCTCGTTGTGGGGCTGTTGGAGCCCGTGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGTTCACGCGGGACGACGGCGATGTGGTGTATCAGGAGGTGGACTGCGGCGCGTTAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGGCAGCAACCGCACCAACCGCCCGCTGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 801-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000086.1 Nocardia farcinica strain CNM20091955 CJ469_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 800 29 100.0 32 ............................. GCTTGCCGCACGTTGATGAGGTGGCCGACAGT 739 29 100.0 32 ............................. AAGGGCCAGATGTCGGCGCTCGTGCGGGGAAC 678 29 100.0 32 ............................. GTACTACGAGATCGAAAGGGAGAGTCCCGAGC 617 29 100.0 32 ............................. CGAGTTCACATCATGCCCGCTGTGCACCCCTG 556 29 100.0 32 ............................. CGTGAAGGTGTCACCATCGACACCAAGCTCAC 495 29 100.0 32 ............................. TGCGCGGCCAGCTGCTCGGCCTTGGTGCCCTG 434 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 373 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCGGCCGGTCTTGCCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAG # Right flank : CCGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCCATGCAGGGAATGTAGCGGTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77-836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEG01000099.1 Nocardia farcinica strain CNM20091955 CJ469_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77 28 96.4 33 .C.......................... CCGTTCGGGAACCGCCCGCGACAGCGCGAACAC 138 28 100.0 33 ............................ CAATCCGACTATACACACGCACGCGCAACAGCG 199 28 100.0 33 ............................ CCGCGGCACGTCCCACATCGTGGCCCGCGACCG 260 28 100.0 33 ............................ CGGTTTGCCGTGCTGCGCGCGGGCGAAGTCGTG 321 28 100.0 33 ............................ CGAGTACCTGCGCAAGCACATCGACGCCCAGCA 382 28 100.0 33 ............................ CGAGGACACCATCGACCTGCCGGAGGCCAAGCG 443 28 100.0 33 ............................ CGTGGGCGAATTCCTCGCGCCGGTCAAGATCCC 504 28 100.0 33 ............................ CCGATCTCGTCGGCCGGGAGGCCCGCGCGTATC 565 28 100.0 33 ............................ CGGATGCGCCTGCTCGGCCGGCTGTACACCAGC 626 28 100.0 33 ............................ CGGCACCGAAGGGTGGAGCCCCAAGCAGTACAC 687 28 100.0 33 ............................ CCTTGCCTGCACCCCTGCCCGGCCGGGCGAATC 748 28 100.0 33 ............................ CGGCCAGCCGAGCAGTGCCGGGTGGCTGTAGAT 809 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGTG # Right flank : CTCGGAGGCAGTCGCCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //