Array 1 34028-31863 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVW01000008.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1258b NODE_8_length_140358_cov_23.7161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34027 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33966 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33905 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33844 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33783 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33722 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33661 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33600 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33539 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33478 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33417 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33356 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33295 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33234 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33173 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33112 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33051 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 32990 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32929 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32868 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32807 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32746 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32685 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32624 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32563 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32502 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32441 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32380 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32319 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32258 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32197 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32136 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32075 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32014 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 31953 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31892 29 96.6 0 ............T................ | A [31865] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52221-50790 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVW01000008.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1258b NODE_8_length_140358_cov_23.7161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52220 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 52159 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 52098 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 52037 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 51976 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 51915 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 51854 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 51793 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 51732 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 51671 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 51610 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 51549 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 51488 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51427 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 51366 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 51305 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 51244 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 51183 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 51122 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 51061 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 51000 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 50939 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 50878 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50817 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //