Array 1 109341-107968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDY01000012.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000196 CFSAN000196_contig0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109340 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 109279 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 109218 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 109157 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 109096 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 109035 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 108974 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 108913 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 108852 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 108791 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 108730 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 108669 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 108608 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 108547 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 108486 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 108425 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 108364 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 108303 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 108241 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 108180 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 108119 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 108058 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 107997 29 96.6 0 ...............A............. | A [107970] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126588-125463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDY01000012.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000196 CFSAN000196_contig0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126587 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 126526 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 126465 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 126404 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 126343 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 126282 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 126221 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 126160 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 126099 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 126038 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 125977 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 125916 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 125855 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 125794 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 125733 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 125672 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 125611 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 125550 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 125490 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //