Array 1 143382-144995 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLA01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain 251 NODE_2_length_407745_cov_21.9991, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143382 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 143443 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 143504 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 143565 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 143626 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 143687 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 143748 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 143809 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 143870 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 143931 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 143992 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 144053 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 144114 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 144175 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 144236 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 144297 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 144358 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 144419 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 144480 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 144541 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 144602 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 144663 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 144724 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 144785 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 144846 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 144907 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 144968 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //