Array 1 289942-291557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJ01000002.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM 818 818_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289942 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 290004 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 290065 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290126 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290187 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290248 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290309 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290370 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290431 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 290492 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 290553 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 290614 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 290675 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 290736 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 290797 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 290858 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 290919 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 290980 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 291042 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 291103 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 291164 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 291225 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 291286 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 291347 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 291408 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291469 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291530 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307840-309615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJ01000002.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM 818 818_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 307840 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307901 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 307962 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 308023 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 308085 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 308146 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 308207 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 308268 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 308329 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 308390 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 308451 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308512 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 308573 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 308634 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 308695 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 308756 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308817 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308878 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 308939 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 309000 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 309058 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 309119 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 309180 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 309241 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 309302 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309363 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 309464 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309525 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309586 29 93.1 0 A...........T................ | A [309612] ========== ====== ====== ====== ============================= ======================================================================== ================== 29 29 98.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //