Array 1 64775-63586 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJJJ01000016.1 Escherichia coli strain MOD1-EC902 MOD1-EC902_16_length_92667_cov_37.6794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64774 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 64713 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 64652 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 64591 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 64530 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 64469 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 64408 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 64347 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 64286 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 64225 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 64164 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 64103 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 64042 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 63981 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 63919 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 63858 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 63797 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 63736 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 63675 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 63614 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCCGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91480-90475 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJJJ01000016.1 Escherichia coli strain MOD1-EC902 MOD1-EC902_16_length_92667_cov_37.6794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91479 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 91418 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 91357 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 91296 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 91235 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 91174 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 91113 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 91052 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 90991 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 90930 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 90869 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 90808 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 90747 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 90686 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 90625 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 90564 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 90503 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //