Array 1 265548-266553 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDDU01000005.1 Klebsiella oxytoca strain H6 NODE_5_length_327034_cov_236.181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265548 29 100.0 32 ............................. ATAATAAATGCCCGGCAGCGGGTCGCCGTTGC 265609 29 100.0 32 ............................. CCTCATGTGTCGGGTACAGCTCGCCGATGCGG 265670 29 100.0 32 ............................. GTTATGGCCGGTACCGACGAACAGCAAACCGT 265731 29 100.0 32 ............................. CGTATAGACGTACAGCAGCGCAGCCAGCGCGA 265792 29 100.0 32 ............................. TCTGGGACAACCTCGGCATCTGGTGCTGGCTC 265853 29 100.0 32 ............................. CTTGGCGATCCTGTTCGTGAGGTATTCGGAAG 265914 29 100.0 32 ............................. ATTGACCAGGCTTCCGCTGACCGACTGTTGAA 265975 29 100.0 32 ............................. GCACTGACACACGAGGAGCTTTGCCAGTTAGC 266036 29 100.0 32 ............................. ACTCCCTTCTTGCCTGCTTCCACTGCTCTGAT 266097 29 100.0 32 ............................. AACGGGCGCAGATATCCATAGGTCCACGTAGC 266158 29 96.6 32 .........A................... TTACTGGAGATCTGATGCACTTGCGTTCAAAT 266219 29 100.0 32 ............................. AAGATCAACCCGCGGATGAACACATTGATGCC 266280 29 100.0 33 ............................. GCCAGTGAACAGCCTGGCGCTGTGGCTGAATAA 266342 29 100.0 32 ............................. CCGGTACCGCGCACGTCAAATACTGAAGATGG 266403 29 100.0 32 ............................. CCTATGAAGTCAGCAACCTCGGACGGGTCCGC 266464 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 266525 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCAAACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGTTCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113542-111314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDDU01000007.1 Klebsiella oxytoca strain H6 NODE_7_length_294668_cov_265.085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113541 29 100.0 32 ............................. GTTATGGCCGGTACCGACGAACAGCAAACCGT 113480 29 100.0 32 ............................. TGATAATTATACGTCTAATGAGCCATAAACAG 113419 29 100.0 32 ............................. GTGCGCAATGCGATTCCATCCTCGACCATCTG 113358 29 100.0 32 ............................. GTACCTGGAGACAAAAACGCGGCGTCGCCCCG 113297 29 100.0 33 ............................. GCCGAAACGGGGTCGTTGTACGGTAGCTCCGAC 113235 29 100.0 32 ............................. TGACCGCTACCCTTTTTGAAATAGCGCACGGT 113174 29 100.0 32 ............................. CATGAGCTGGGCGAGCTGCCGGTGATCAACGT 113113 29 100.0 32 ............................. CCTTCACGTCGGCGCTCCCCTTCTGCATTACG 113052 29 100.0 32 ............................. GTGACACGGTCGCCAAAATCACCGGCGTTTAT 112991 29 100.0 32 ............................. TGAATTTTTCCTTTCCGAACGGCATCTGCGGT 112930 29 100.0 32 ............................. TCTGTTTGTCTAAGCACGATCGTCCCTCGCAT 112869 29 100.0 32 ............................. AAGGGGAAGAAGTCACCGCTGACGGTGCCGGT 112808 29 100.0 32 ............................. ATTACGCCGCGCGTTCAGCCGCATGGTTTTAT 112747 29 100.0 32 ............................. TTGACTCCTGCGCCAGGTCGGGGCGCTGCCGT 112686 29 100.0 32 ............................. TTACCGCAAACGCGGCGCATAGCTTGATCACG 112625 29 100.0 32 ............................. CCGATCAAAGTCAAAACCGGGATCGTGATGCC 112564 29 100.0 32 ............................. CATCGCCCCGAGCTTATCCCGGCATATCGTGA 112503 29 100.0 32 ............................. GCACTGAGGACAGAGGCGTGTAGTGTCAGAAT 112442 29 100.0 32 ............................. ACCATAGAACCAAAATCAACCTCAGGGTCAGC 112381 29 100.0 32 ............................. ACAACGCACCGCGGCAGAACAGCGAAAAGTTA 112320 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 112259 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 112197 29 100.0 32 ............................. ACTTGTTCAGAAAAAACCCCATTAGGAGGTTA 112136 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 112075 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 112014 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 111953 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 111892 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 111831 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 111770 29 100.0 32 ............................. CGTTGGATCGACGATGACTCCCCGTTAAAAAT 111709 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 111648 29 100.0 32 ............................. GGTACTGCCCTGCACTGTCTGCTGCTGGAGCC 111587 29 100.0 32 ............................. ACAACGCAGCCAACTGAGATTCAGAAGGCAGC 111526 29 100.0 32 ............................. CGATCCACTTTCTCACCGCAGAGCAAAAAGAA 111465 29 100.0 32 ............................. CCTGCCGTTGACGTCAGACATCAGACACTAGC 111404 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 111342 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //