Array 1 8101-5289 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYPK01000005.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-1 F14M01626-28-1_Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8100 36 100.0 30 .................................... AGAAATTATTCTAGCGATAACGGTTAGTGC 8034 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 7968 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 7902 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 7836 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7770 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7704 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7638 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7572 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7506 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7440 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7374 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7308 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7242 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7176 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7110 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7044 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6978 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6912 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6846 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6780 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6714 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6648 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6582 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6516 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6450 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6384 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6318 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6252 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6186 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6120 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6054 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5988 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5922 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5856 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5790 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5724 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5658 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5592 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5525 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5459 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5393 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5327 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5292,5295,5300] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 39359-39911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYPK01000008.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-1 F14M01626-28-1_Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 39359 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 39425 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 39490 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 39554 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 39620 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC CTA [39630] 39688 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 39753 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 39818 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 39882 29 93.1 0 .......................A....C | C [39905] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //