Array 1 15639-11459 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRJ01000046.1 Actinomyces naeslundii strain Pn6N Pn6N_contig048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15638 29 96.6 32 ............................G TCACGAACCCAGGGACCGGCCTCAACGCCGCC 15577 29 100.0 32 ............................. AGCCATCATCCCGCCTTGACGGTGCCCAATTG 15516 29 96.6 32 ............................T GCCCTGAATCGGACGCGTAAGGCCCCTAGAGC 15455 29 100.0 32 ............................. TGTCCTTCAACTCGGAATTCCTCATCGGGAAA 15394 29 100.0 32 ............................. TCAGCAAGGCCACAGACATCCCCCGCTCCACC 15333 29 100.0 32 ............................. TTGTTCGTCGCGTCGGAGGCGTCGATGGCCTG 15272 29 100.0 32 ............................. TCTGCCGACAGTCGCGCCACCGTCCACAAGGC 15211 29 96.6 32 ............................G GGTACGTGGGACATCGAGATCCGCTACTCATA 15150 29 96.6 32 ............................T AAGGCCCTATCAGGCCGGGATCAGCGACTTCG 15089 29 96.6 32 ............................T ATCACCGTGTGGTTCGACTGGACCGTTTTCTC 15028 29 96.6 32 ............................G CCGAGCTGGTACAGCAAGGTAGGCGCGGACAG 14967 29 96.6 32 ............................G ACTTTGGCCTCATCAGGCAGGTAGCGCAACGA 14906 29 100.0 32 ............................. TCTCGGGACCAAGCTGCCGCTTCATCCGCAGG 14845 29 96.6 32 ............................G GTTTCCCCAGGCGCCCTCAATTGTCTTGGTCG 14784 29 96.6 32 ............................T TCGCAGCCTTCGCCAAGGGCGGCATCTGGGAC 14723 29 100.0 32 ............................. CGCTGGTATGAGTCCGGTGGCTGGGGGCGTGG 14662 29 96.6 33 ............................G TCTCCTACACCAAGTGAGAAAGGCGAATTGATG 14600 29 96.6 32 ............................G CGCTTCTGCGCCGCGTCGATCTCGGCCTTGGC 14539 29 96.6 32 ............................G GAGCGCCGCCCGAACAGGTGGGTGACCGTCGG 14478 29 96.6 32 ............................T TCCCCGTGTAGGCACCGGCCTCGAGGAGGGCC 14417 29 100.0 32 ............................. CCAAGGGTGTTCTTGAATTTATTGGTGGCATC 14356 29 96.6 32 ............................G TCCTCGACGCGGGCTACAGCCTATCTGCCTGG 14295 29 96.6 32 ............................G GACCGACAGATGACTAGCAAGAAGACGAGCAA 14234 29 96.6 32 ............................G AATGGGGAATCTGCGAATAAACAACTTCCCCG 14173 29 96.6 32 ............................T ACGGAAGAAACCATGCTTCTCATCATAGGTGC 14112 29 100.0 32 ............................. GCCAAGCGCCCCTAACTCAAGACACGGAAATC 14051 29 96.6 32 ............................G CCCGAAGCCGAGGTATCCTCATCAGCAAGTGG 13990 29 100.0 32 ............................. GAGTGAACCATTGCTGCATTATAGGCGGAAGT 13929 29 100.0 32 ............................. GACATGTTCGCAGCCAGCGGCGTCCCATACTG 13868 29 100.0 32 ............................. CGTTTGATTGGGCATGGAGGCAACCCATATTA 13807 29 96.6 32 ............................G TCCTGCCTACTACACACCCAGTACTGCGGGGC 13746 29 100.0 32 ............................. CCGCCGCCATTTGACGCATAGTTGTGCGGCAC 13685 29 96.6 32 ............................G TTATTCTGTCGCACATTATCGAGATTCGCGAG 13624 29 100.0 32 ............................. GGATCATACTTAGTGCCACGAATATCAGCACC 13563 29 100.0 32 ............................. TTGCCCGATGGGTCTTTCTCAAACTTTTCAGA 13502 29 96.6 32 ............................G GAGTGCGCTGCTATCGGATGCCGTGCTAGGAC 13441 29 96.6 32 ............................G TCGCGAATCCAGTCACCAACAGTAAGGTCACC 13380 29 100.0 32 ............................. GCCTCGCTTGGGTCCGTCGGCCTCGGCGGCGT 13319 29 100.0 32 ............................. CATGACCGCGAACCCTCGCACACGATTGCGCC 13258 29 96.6 32 ............................G TTCGTGTACGGGCGAGCCCACGCAGGAAGCCT 13197 29 96.6 32 ............................T TCAAAAATGATGTGGCTCGTACTCGTTTCGGA 13136 29 96.6 32 ............................G CAAGGAATGTTCTGGGAGCGCTATGGGTACGC 13075 29 96.6 32 ............................G TCCGGTATTCAGACCGTATGGGACTCCGTTAA 13014 29 100.0 32 ............................. CCCTTTCCGTGTAGTGACTTAAACTCTGCCAG 12953 29 100.0 32 ............................. TCCATCTGAACTCTCTCTACGGCAAGTTCGCC 12892 29 96.6 32 ............................G GCCCAAGGCCCGGTCATCCCTGCCGCGCCCGC 12831 29 100.0 33 ............................. GTAATGCAAGGGTTTCAGAGTGTGCATTCTCTA 12769 29 100.0 32 ............................. AGGTGGAACTCTCACCGTTTCTGGGGATTCCG 12708 29 100.0 32 ............................. CAGGTCCTCCTTGGCGGCGTAGATCGCCTCAG 12647 29 96.6 32 ............................G GTGGCTAGCGCCATCCTCGTGGCCTCGTCCAG 12586 29 100.0 32 ............................. GCCGCAGCCAGCAAGAGCGCCGTCCAGAAAGC 12525 29 96.6 32 ............................G GTGGAGTGCCTGGACCTGCTCCAGGTGCTGGA 12464 29 100.0 32 ............................. TTTCCCGGCACGACGCGGTCACTGGACCAGTC 12403 29 96.6 32 ............................G GTGTGGACGAATGGGGGCCTCCAGGAGGGTGA 12342 29 100.0 32 ............................. CAGGTCCTCCTTGGCGGCGTAGATCGCCTCAG 12281 29 96.6 32 ............................G CCACCTGAATCGAACTTGTAGAGCCCGGTGCT 12220 29 100.0 32 ............................. CCGGACACGGCGTTCCACACCGTATTCCAGGC 12159 29 96.6 32 ............................G CCGATCAAGGAGTTATACGACCAGCTGCCGTA 12098 29 100.0 32 ............................. TCTCTGCCGGAGAAGACTGTCTTCGGCACACA 12037 29 96.6 32 ............................G TTCTCGACTCAGCCCGATACTGAGCGCGAGAC 11976 29 100.0 32 ............................. TGCCTTCCCGGCTGCGCTGCATGAGTCGCTTT 11915 29 96.6 32 ............................T TTCAAGGGGATCGAGGGACTGTTTAACGACTA 11854 29 96.6 32 ............................T ACCAGACTTCATATTCTCGAAAGCCTTTTTGA 11793 29 96.6 32 ............................G GACGTTCTTCTTGAGAACCGCAGTATTCAGAA 11732 29 96.6 33 ............................A CAGATTGCCCGGTATCGCAATACTCTTGTGAAT 11670 29 96.6 32 ............................G ATAGTCAACGATAGCGTCTCGAACAATGTCGT 11609 29 100.0 32 ............................. GGGCATGTCAAGACACTCAGCGATCTCCTCGA 11548 29 89.7 32 ....................A..C....T GGATGTCAAGGGAGGCAGGCCGTAAGCGTTGA 11487 29 69.0 0 ..G.G.......G....TT...CA...TA | ========== ====== ====== ====== ============================= ================================= ================== 69 29 97.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCGGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATTCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GCGGACCTGGCTCGGACGACAGGTTCATGTATCTGGTGCGCCCGGTTCAGGACGAGCGCAAGGCCGCTGGCCTGCACGTGGGGGACCGGATCCGTCTGGAGCTGAGGGTCCCGGAGTACAAGGGTGCCTGGACCGGTGCCCATCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTCCGTCATCGCTGCCCCCAAGGAGCCTATCGCCACGGTCGAGAAGGTCGTCGAGATGGCCACGGAGGTGGCCACGAAGACGAGCGAGGCCTGATCCAACACGCCCAGTCGATTACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAATGGCGCGTTTCTGCTCCCCCAGGACCGCCTCTCTCATCTCCCTAGCCGGTACTTGTCAGGCCGCCGAGACGGTGGTCTGAGAGGCGTTACGCGTGACCTCAACCCTGGGTGGGGCTGCCGGCACCCTAATTAAGAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //