Array 1 8539-7908 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKX01000028.1 Limosilactobacillus fermentum strain NCDC 400 scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8538 36 100.0 30 .................................... CCAGTTACGAGCAACCTTGAAATGACGATG 8472 36 100.0 30 .................................... TCTTCCGCACGGTTAAGGTTATCCACTCTA 8406 36 100.0 30 .................................... AAAGCTTGACAAGGTTGTAACGTACCCGTT 8340 36 100.0 30 .................................... CGCTGCACGTGGCAACCCGGTAAGTGGGTA 8274 36 100.0 30 .................................... AAATAAAAACAATTATTTTGAAGCCAAGGA 8208 36 100.0 30 .................................... CATAAAAGCGCGCAATCTCGAAAGTGGCGG 8142 36 100.0 30 .................................... TTGTTATCGGTGCAGTTGGCGATGATGTAT 8076 36 97.2 30 ............................A....... GAGGTTCGATTCCTCTAGTTGCGGATAGAG 8010 36 100.0 30 .................................... CCTAATTCATCGTCAAGATACGTCGACGTA 7944 36 88.9 0 ............................TT....TA | A [7912] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTATGACGAAAGTCTTTTGAGATTATACAAGTATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAGACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAAAAACG # Right flank : TAGACTAAGGGAGTTGCTGTTTTTAGCAATGCTTTTTTCATCTGCGCCGCCTGGACTTGACCCCGCAACGTTCCTTGGTGGTGGCGACCTGGAGCTTTTGGACCTGCACGATGTTCTTGCCGTCGATGCACGACCGTTACTCCTACTTCGTGATGGTGATGCTGGCCCTCGTCGCCTTATTGGGCCGCCGGATGATCGGCGTTGCCCTGGTTTCGATCGGGATCAGCACCGTGCTTTACCTGCGCTACTTGCTTAACGCCGACGCGGCGATCGACCTCTGGCCGCTGGCGATCATCCAAATCATCAACTACTGTGGCTTTACGGCGGGCACCTTCTTGCACCCGCAGCCGGAGTATTTGCACAGTTTTAGATAAAAAAACAACGCCCACACTTTCAACTAGGAAAGTCGGGGCGTTGCTTTTTTTTAATGTTAAACGGGAAACCTGTGAAATAACCGCAGGCCTAGTGCCTAAGCAGGACGAAGAACGGTGCGTTGCGCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 38180-38331 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKX01000003.1 Limosilactobacillus fermentum strain NCDC 400 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 38180 30 100.0 31 .............................. ATTGACATGGCCACCAGGGACTACTATCAAA 38241 30 100.0 31 .............................. CGAAAGTCCCCGTTGTCGGCAATTTCCGTGA 38302 30 93.3 0 ............................AT | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GGATCACCCCCATATACATGGGGAGCACCC # Left flank : AGTTTTGATTGATCACCCGTTACCCTTCAGGTCGGCGTTTAACACGTCGGTGATCAACATGTGGCCGGGGGCGTGGGTAATCACCAGTGGGAGCTTGCTTTGCATGATCGCGTTTTGCGGGGTCACCACACAGGGCCAAAAGACCGGCAGCTCCCCATCTTTGATCGTGACCGGGTCACCGTAATCGGGGTGGGGCAGGTCTTTGATCCCTAACGAAGCGGGGTCGCCAACGTGGATTGGTGCCCCGTGGACCCTAGGCATCGCCGCCATCACCTCCACCGCCTTAGCTACCTGGCTAGCCGGGATTGGTCGCATCGACACCACCATGTTATCGTGCAAGGCGCCGGCACCTTGCAGGGGTAAGTTGGTGTTATACATCGGCACGTTGACCCCCTCAGTGATGTGGCGCACCTCGATGCCGGCCGCCAGCAATTCGGCCTCAAACGAAAAGCTACAACCAATCAAAATGGAAACGAAGTCGTCTTGCCACAGGCGTAGAG # Right flank : TTAAAAGATCCCTGTAACCAAGCGATTTTCAAATCTTCAAAAAACCTTTTTCAATCAGTTTGGTCATGAGCTTGATCGATGCCTCGGCGTCCGCTAGTGAATTATGTTGATCCTGATTCTCAATTTGGTGGTATTTTAGAACCGTTTCAAAGCGAAAATTATCCAAAAAGACTTCCTTTTGCCTAACCACTTTAAGTAAATCAATAATTCGATTACCTAAGCGATCTTGTCCTATTTTATCATACCCTCGTTCGATAAATTCCCAGTCAAATGCAACATTATAACCAACCACTATTACGTGCCCAATAAAATCTTTGAAATCCGTAAGGGCAACTTCTAAGCTAATTCCTTCTTGATTAACTTTTCGCTGGTTAAGTCCCGTTAATTTAACAATTTTAGGAGGAATTTGCTTGCTAGTTCTGACGATCCGATAAAATCGTTCAAGCCCTCTCCCCTTGGTTGACTTAACTGCCCCTATCGATATTATTTCGTCAGTCGCT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCATATACATGGGGAGCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //