Array 1 527674-527341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000002.1 Thermoactinomyces sp. CICC 10522 NODE_2_length_557984_cov_2.305991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 527673 38 100.0 34 ...................................... ACTTGATGTGCTTCTTTAGAGTCAAAGGTTTTCA 527601 38 100.0 34 ...................................... TTTCGTCTTCCGCTTTGGCTCAGGTGGCTTCGTC 527529 38 97.4 37 .......................A.............. ATAAAACCTTGCACAAGACGCCAAAGCATGATCAATG 527454 38 89.5 38 .........A..........A..A.......A...... CTCCAATATTAATGTCATTAGCTTGAACAAGTTGAGTA 527378 38 84.2 0 .T...............C.....AA......C.....G | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 94.2 36 GAATCAATAGATACACCTCCGGTGGGAGGATTGAAACT # Left flank : TCAGCACGAAACCGACGATCAGCAGCACCAATATGTTAATTTTTGTCCGCAACGAAAATGGTTTAAGGGAGAAGTTCATCATGGACCTCGTTATAATTGGTTGGAATATTGTTAATAATATTTCAAATAATATTATCACAATCAAAAGAGATTAAAACATCGAAGGGGGGATTTTTACGGGATGCCTGCTTGCGCCCGGGCGAAATTGGAATGCAGATCAGCCCCGTCCTTTCAGTCAGGCTGGGTTGCGAATAACAAAATGGATAACTTATAATTGAAAATAAAATAAGAAAAATTCTCTCCCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCAAGGGTTGTTCGGAAACGCCAAAGTCTGCAAAAATAAAGGGATCCCAGACTTTTTGGACGGAGGTTATCCAGTCAAAAAAGCCTGAAACCTGGGCAAATCGGGGAGATGTTCGGAAAACCACGAATAAGCCCAATAAAATTAAGGAGTACAGTGAACGCC # Right flank : TTCCAGGGAGTGAGTCAGTTGTCCTGCCGTCAAAGGTTCTTTTGAGGGTGGGCCTTATCTGTTTTTATAAGACATGTTTGAAACACAGACTGATGAACATTTAAGAAACCGAGGAAGAATTGCAACAAGAACGGGAAGAAATCGAGAAGGGATAAAAAAAGAAGCAAACAAGCTTATCGATGGCGGAACAAATCCAAGAGGAGGAAGAAGATGAATGAAGCCCCGAGTCTACTTCTGCCGGGTTTGTGGAGAAAGCTTTGATTACCCGGATATCGTTTGCGCCAAGCATCAACTGGAACGGGAGCGGATTCACAAAGAATGGAGGGAAGACCCGGGGTATCAAAAGATTCAGGAAGAGGCACGAAAACGAATTGAAAAATATTTTCCGAAGAAATAAAAAATCACCCGCTTCAAGGAGACTCAACAATAATAGGGATCCTGGCCAAGATCACACTTAACTGTTCCCAAGTTACCAGTGGTCGCATCAAATCCCTCCTTTG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAATAGATACACCTCCGGTGGGAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 246422-246600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000001.1 Thermoactinomyces sp. CICC 10522 NODE_1_length_662512_cov_3.059540, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 246422 32 100.0 44 ................................ GATATGGATAGATGGGTATGGGGAGAAAAAGAGGATGGGGTTTC 246498 32 100.0 39 ................................ TTCGACGATGGTTCGGGTAGGGGATGGTGGAATAGTCTT 246569 32 78.1 0 ..............CG......A...G..TTA | ========== ====== ====== ====== ================================ ============================================ ================== 3 32 92.7 42 AATCAATACACCTCATGTAGGAGGATTGAAAC # Left flank : AAAAGAGATAAACCCAATAAAATTAAGGGGTACAGTGAACACCGTCTCAATCAATATACCTCTGGTAGGAGGATTGAAACCTAAAAGCATCCATCACAAATATAAACTCATCAATCACCAGTCTCAATCATTACACCTCTGGTAGGAGGATTGAAACTTCTGTTTCATCGATTCTTTTGATTCTGTTTCATTGTCTCAATCAATACACTTCCGGTAGTTCAATGGGGCACTGATGGGGTTTGGCTACAAGACTGCGTGGGGATAGGGACAAACCATGCTGGATCCCATGGAAGAAGCGACACATTACCGAACACAGGGGGCTTCGAAAAAATCCCCGGGGTTGTTCGGAAATTCCAAACCCCGCATGGGATAAGAAAAATCACCTGCAGAGAATGATTGCTAGGTGATCTGGATATCCGAAATTCCTGTTATGACAAGGAGGCGTTCGGAAAGACCCGAAGAGAGTCAAAGACGTTGAAGGTTTCAACGAATGCCGTCTC # Right flank : AATAAATACACCAAAGACAGCCTATCCCCATTCATGAAAGGAAACGGGTCATGTCCAAAGTTCACCAAGTGCACAGCAAATATCGTGACCGCTTGCTTGGGATTATCGCTGAGTTGCTCCACGATCCCGGTCCCCACCGGATCAAGGATACTGCTGAACGTTATGGTGTTTCTCAAGAGAAGAGACGAAGGGATCGCAATGATCTGATTGAAAAACTCAACAAGGTTAACCAGAAAGAATACATCCTCCGTGGCCGGGGGTATTACGCAGGCAATTTTGTGCGGGGAGTTGCCAATCTATCCCCTGAAGCTTGCGCCAAGTGCAGCCTTTGTTGAAGGAAGATGGGGAGAAGGCGTATCGCGAACTTCTGGAACACACCTATTCTGTTTTAAATCCGGAAGATGTTCGCAGGTTGAAGGAATGGTCCGATTTCTATTTTGTGAGCGAGTACGGATATCCTCAGATCCGAGGTCATTTTTATCATTCGCTGCAGGAAGTGT # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAATACACCTCATGTAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 261975-262457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000003.1 Thermoactinomyces sp. CICC 10522 NODE_3_length_297569_cov_3.114129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 261975 37 100.0 38 ..................................... GAGGAATGGGAAAAGGCTCTAGCATTGAGCGGCTGGAA 262050 37 100.0 38 ..................................... GGTCATGGATAACGTCGCCGCTTGGTTGGTGACGGGTG 262125 37 100.0 35 ..................................... CTGCCGCCTCACGCTCTGATTTTGTGTCGGATGAA 262197 37 100.0 36 ..................................... AAATGAGACTCCGGGGGTCTCAAATTGCGACACAAA 262270 37 100.0 40 ..................................... TCATGCGTACATACGCCGACTTGGTCGGATCGCATAAGTG 262347 37 100.0 37 ..................................... CAGGAAATAACGATCAGCGGAACTGAATATCCCGGCG 262421 37 94.6 0 ...................GG................ | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.2 38 GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Left flank : GTAAAAAACGCCCACCCTCAGGCGCAAAACCATGCGCAGCTGATCCTCCCTTCCAATAACGACAACGCGGTGGCGCATTTGATTCAAAATCATTTATTGCCAACACTTTCCCAAACATCAAACTGAATGGAAAAGGAGACCTGTTGCCGGGTCTCCTTTAGACTTGTATCCGGATTGTTCTCACTTGGATCTTCAAGCGGAACCGGTTATCTCAAAATAAAAAGTGAAAAATTCTACCCTTTTCTGTTTTTTTGTTTTCTCATTTGCTATATTAGCAGTAAGGTGCTGCAAGAAGATCCCTGCCATCATTTGCGAACACCGGAAGCTTCGAAACAGATCCAAGGGATGTTCGGAAACGCCAAAGGTCGCAAAAACAAAGGGGAATCAGACTTTTTGAATGGAGAAGATCCTGTCAAAACGGTCCGAAACCCGGATGAATCGGAAAGGTGTTCGGAAAATCACGTACAAACTCAATAATCAGAAAGGATCTCATGAACGCC # Right flank : CATCTTGCGGAAACGGCCGTGATCGGGGCTCGTTGAATCAATTTACGTATGAGCAAACAATCCATATGCTCTGTCGATTTATTTTCACACCCCGGATGAAAACGAATTTAAGATGATCACAACTTTATGATCAGACTTCTAGGGGGGGATTTACCAGCCACGGCATTGGATGAATGGTTTATCAACAAGAATGAATTTTCTAGAATTTTCATCAATATTCCGTACACGTCACTACTGGTCTGCAAGAGGGGAATATTTCCGCCTGGTCGATCGGGCGAATTTCCCGGTGGAAAATTTAAGCGATCCTCTTTGGATTCCCATTCACAATTAAATTTTAAACACAAGCAAACTCGTATCAAAAATCGCTTCCATCTCATAAATTTCATATTGGCTTAATTGCAGCAATGAACACGGTTTCAGCCTGAACCGCTGATTATATACACTAAACATGATCTCCCCGCGAATCAAAAAAATAATTGCATCAGAGTTTAAATAATGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 90975-91153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000009.1 Thermoactinomyces sp. CICC 10522 NODE_9_length_119686_cov_3.699357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 90975 37 100.0 33 ..................................... GGCTCTTGAATCCATGATCGATGCTAGTGGGCG 91045 37 100.0 35 ..................................... TGGATCAATACAGACGCAGATAAGCCTCATAAAAA 91117 37 89.2 0 ...................G..TAG............ | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 96.4 34 GGATCAATAAATACACCTCAGGAGAGAGGATTGAAAC # Left flank : GACTTGATTAAGTTTTTGCAGGAGGAATTCGCGAAGATCCACGAGAAGATGGATCAGCGTTTTGAGAATATCGACCAGGAGTTGGCCGCGATCAAGATGCGACTTGGTGATGTGGAGCGGGTGGTCAGAGAATCTGCAGAGGATATTCTCGAAAATCAAGTGGAGGAAGTGGCTCGCCACAATCTTCATGAGGACAAAATTCAAGCATTGGAAGCTACCACGTTTCGGATTGACAAATCGGTACTGGCATTGAAGAAACGGGTAGAGAAACTGGAAAAAGGAAAGTAAATTGGTATTTCGGTATTGGATTGGCGAACACCGGAAGCTTCGAAAAGAACCCAAGGGTTGTTCGGAAACGCCAAAGCCCGCAAAAATAAAGGGGAATCAGGCTTTTGGGATGGAGGTGATCCAGTTAAAAAATCCCGAAACTTGGGCAAATCGAGGAGGTGTTCGGAAAATCACGGATAAACTCAATAACATTAAGGAGTACAGTGAACGCT # Right flank : CAGGGTACGGTCTTCGTCTTCTAAGATAACAAATAAAAAAAGCGACTTCGCTATCGCTCTTCAATAAAAAACTTGACTATCGCTTCCTTTGATTTCTTAAAAAGCTTGCCCCTTTTTTGGGACAGGCTTTATTTTTTCTTTAGTAAGGAGTAGAAGGAACGATTCTGGGCCTAAAAGAGACGCTCGACACTCCTGATAAAATAAAATGACCGCTCCGCCATAAAAACGGAGCGGTGAGAACTGTATTTCAACGATGGATCGACATTCATTTTACCACAACGAGGGGTAATGAAAAAGAGATTTTGGCGAACAGATCTTTCAAAGAAACTGATTAGGATCCATTAAGGGACTGGGGTCTTCTACAGTGAGGGGGTTTTTTTGCTCATTATGTCCTTTTTCATTTATTCACTGTGCGTATTAATAGTGAGGGGGAATTTTTTTCATGATTTTTGCGCGAGCACCCCTGTTGGGCTCGTATATTAGAAATGAGGGGATAAAAA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCAATAAATACACCTCAGGAGAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 204107-204438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000005.1 Thermoactinomyces sp. CICC 10522 NODE_5_length_210917_cov_2.018869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 204107 37 100.0 38 ..................................... GCCCGCCTGAAACTCGATTATCCCGCTTTCCTCTTGGA 204182 37 100.0 37 ..................................... GCCAGCGCCGGGGCATCCGGTCTGGAACCGCATTGAG 204256 37 100.0 36 ..................................... AAGTCAGGATTGTAGCTCTTGCGGACGACTTCCAGA 204329 37 100.0 36 ..................................... GTTTCCGCTTCGTCTCCTTTCGGGATTTCCGGTTTC 204402 37 91.9 0 ....T..T..A.......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.4 37 GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Left flank : TCTTCATCATATTCTGTGTTCTGAACTGTAGCGGTCAAAATACCCAGTTTTAGTTGTGGGGCCGCATCTGACAAAGCAGGATCGATATGAATTGGTTTGACCATGTTATACCCTCCTTTAGTATAGACAGTGTGAATCTCTTGTATTTCTTCTAATACAGGTGCCGGTTGTCCTGCTGCTGTCATATATATCAATCCTGGAGTATACATGGGCGGTTCGTCTCACTAACTAGTTACCAGGCTGTATTGCAAACAACAAAATGGATTACTTATAATTGAAGATAAAATATGAAAAATTTTCGCCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCAGGGGGTGTTCGGAAACGCCAAAGCCCGCATAAGATAAGAGGGAACACTACTTTTTGGATGGAGGTTATCCAATCAATAAAGCCCGAAACTTGTCCAAATCGGGGAGATGTTCGGAAAATCGCATACAAACTCAATAAAATCAAAGGGTACAGTGAACGCT # Right flank : CGTGTCGAGAATCGGCTGACGTTGCTTCTGGTAACACCGAATCAATAAATAAACTTCAGGAGACCATCGTACTGCGTTAGTCACTAAAACAAAAAAGTCTGTCAACTTCCAGCACCGTAAAAACCCGGGGGTTGACAGACTTTTGTTCAGTTTGTTTCCGATACGAAGGGAAAATGGCTCCATATTTGAGAATTGTTGCCTGCCTTTGCCAAAAAAAAGAGGCGTCCATCGCCTCTCTAACCTAGGGCATATAAGTCGAAAAATCCAAAAACATTTCTGTTTATTGGAAAGAACCGAGTCGCCGGATGCTGGCTCTGCCTCTGTTGATTTAAGCATTAAATTCCTTCCACAATCCGTTTTGCCCGTTGATGCGCCTCGTACAACAGTCTCTCTTCGTCAATCGTCAACAGTTCTCTGTTTTTCATCAGGATCTTTCCATTCACAATCGTTGTCACCACATCTTGACCGAAAGCGGAATATACCAGCAGCGAGACCAAATC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 207581-207836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000005.1 Thermoactinomyces sp. CICC 10522 NODE_5_length_210917_cov_2.018869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 207581 37 100.0 37 ..................................... ATGGATGGTTTTACAAATCAGCAGAGGAATTAGCGGA 207655 37 100.0 37 ..................................... TGACTACTAACAAGGTACCTAATGAGGCATCTAACAC 207729 37 97.3 34 ........................A............ TTGCGAGATTTACCACATGTTCTTCGACTTCGGG 207800 37 94.6 0 ....................G....A........... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GTCTCAATCAATACACCTCAAGCAGGAGGATTGAAAC # Left flank : CCTTTTCCTCGTAGTAGCGGATGGCGCGTGGCGTGATTCCCAGCCGCTCCGCCATCTCCTTGATCTGCATTTTTCTCACGGAGATCCCTCCCGTTTCATCATAAACGTTGACGCTGCGTGAAAGTAAAGGGGGGAATGTACCGCCGGGTTCTGTCAGAAAATCGGCCAATCAGCCCCAGCCTATCAATCGGTAGCAAGTTATGTTGAAAAATATAAGATAGATAACCTATAATTGAAGATAAAAATATGAAAAAATTTATATTCGAAAAAATGATCTTCGTATAAAAGAAGATTTGCGTATTTCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCGAGGGGTGTTCGGAAACGCCAAAGTCCGCAAAAACAAAGGGGGATCTGACTTTTAGGTCGGAGGTAATCCAGTCAACAAAGCCCGAAACTCAGCCGAATCGAGGAGATGTTCGGAAAGACCCGGAGGGAGATAAAGACGTTGAAGGTTTCAGCGAACGCC # Right flank : CTGCCTGCGAAAATTCGGCAATACGACATCTTCGAGGATCAATTCTTTGGTAAGAGAATTGAAACAGGGAGTACATAGCAAACGGTTTTGACGAATCAGTAAATACATCTCCGGCAGGGATGAAAGCAAAATGGTACTCCCGGTAAACTTCAGCTTTTGGCTGGTATCATGGGATGGCGTAATGAAGAAGATCCTGGCATTGCTGACTAACGATGATCAAACCAATACTATTAATGGATCCGGCTGATTTGTCCGATGTTGGAGGCAATTTCAGTGCCGGATCCGATATGATATACCCAGCCTAGTCGATTTCCTGAATCGTCCGGGATTCTTTTCCGGGGGTGTAAGTTATATCTTTACTGAGAAGTTATATTTAATAAGGAAAGAGAGGATAGAAATTGTCTAAGAAGAAAAAGTTTATACTCTTGTTACTACCTGCTCTGGCATCTGCTTCACTAATTTCATTCCTGGTTTATTCTTGTGTCCAGATCTGGATTCCG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCAATACACCTCAAGCAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 210641-210479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVY010000005.1 Thermoactinomyces sp. CICC 10522 NODE_5_length_210917_cov_2.018869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 210640 30 100.0 36 .............................. TTCGTAATTGCTGTACACGATGGCTGTCCTGAAAAC 210574 30 100.0 36 .............................. TCGGTCATTGACTTGGTATGTTGGGTTTGTGTAATC 210508 30 93.3 0 .................T...T........ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GTTTAGTTGCATCCATACTGGGATTGAAAC # Left flank : CCATCATCTTTTGAATCTTTCAAAAACAGGTGATGCAAAATCTCTGAATCTACGGTAATCTGGTATTGAGCCATTGTGAAACCCTCCTTGTTTGGGAATATTTGCCAACTACTATTCTAACCGAAGAATTTCACCATGGCTCAATTATTTTTCGCAGCTTCCATTTTTACACAATTATACGGACTTAACTGGGGATTTTGCACGATTGGAGGTTCACAGACTCTTTCCACTTTAGTTATAATGAAAAATAATTGATATTACTGATGTTCACACACG # Right flank : ACTACGATGATGATCAGACACGAAGAGATGAGCCACGTGTTGAATCGATATCAGGATTAAAAAGGCATCCGTACCTTATTATTCCAAATATATCAAAAGAATAAGACTGATATTCTTACGTGGCTGATTTCGCCCCGGCCAATCTAACAAACCAGGGTATTGCGCCCTGGACTCTTCATTCAGCCTCTTGGTTGATCATTAAGTGTCCAAGTATACCAAAGCTGCTCGTTTATTTCCGTTGTAGAACGGATGAACTTGTACAAGTGATTGCACTAATGCTCCATCATTCCTTGTATGATTGCGAATATTTCGACTTGAATGTCGTTCGTACAGCTACAGGGAACAGGCGATCATCAAACATGCCCCCGCTTGCTCTCCTTCCCCGAAATCTCACAAAAAGACCAGGGAAACAGATCACCCCTGGTCTTTTTATCATGCAAGAATCTGCATAACTATAATGCAATCTCTGTTTTACTTGATCTTCTGCCTAGAGAAGGTCT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGCATCCATACTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.80,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //