Array 1 41112-42146 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACEWR010000005.1 Staphylococcus chromogenes strain SC12 NODE_5_length_200462_cov_165.765, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     41112	    36	 100.0	    30	....................................	ACGAATGGCGTATTAGGCGTCTTGAAGATA 	
     41178	    36	 100.0	    30	....................................	AAAAAGCTGGATAATATTGAGCACAGTTTG 	
     41244	    36	 100.0	    31	....................................	TTAGCTACCATAGCACTATCTAATCCTGCTT	
     41311	    36	 100.0	    30	....................................	GAATGATTTTCCACCGCCTGTTTTTCCTGT 	
     41377	    36	 100.0	    30	....................................	TTACATACATGGTTACTGATATGGGAGGGT 	
     41443	    36	 100.0	    30	....................................	AATAATACAAGTATTAATAGAGACAGAGAC 	
     41509	    36	 100.0	    30	....................................	AATTAAGAGAAAAATACGCCATCGAAATCG 	
     41575	    36	 100.0	    30	....................................	GTATTGTCAGACGGGAATACGTACCCGTTT 	
     41641	    36	 100.0	    30	....................................	AAAGTAGATAACGATGTGTTAGCGGCACTT 	
     41707	    36	 100.0	    30	....................................	ATTAGATCAGTGGTAAATTCCACTTTCTCT 	
     41773	    36	 100.0	    30	....................................	TTAAAAATGGCTACACGTATAAAGACGGTT 	
     41839	    36	 100.0	    31	....................................	TGACCTGTACCTTGTCTAACATCTGTACATT	
     41906	    36	 100.0	    30	....................................	TGGACGTTTATCTTGCCTAGACTCAACCCC 	
     41972	    36	 100.0	    30	....................................	TCAGTTATGTTTAAATGCGCCATACAACTT 	
     42038	    36	 100.0	    31	....................................	CTTCATTTGGCTTGAATGATTGGATAACTAC	
     42105	    36	  94.4	     0	...........................T.......A	|                              	TTT,CA,C [42131,42138,42142]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.7	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                               	       

# Left flank :   GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//