Array 1 1223-1372 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYW01000202.1 Lactobacillus helveticus strain JCM 1120 sequence202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1223 29 96.6 32 ............................C GGCCGTGCCGGTATTTTAACCTGCTTGACAAG 1284 29 100.0 32 ............................. ATCACCAACTGGCCAGTTGATAACGGCGCTCC 1345 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATTTTTTATTAAAGAGGACTATGTCCTCCTTTTTTAATGCAATAAAAAACCTGTTAACAGCTTATCATATAGATAAGTCATCAACAGGAAAAATTATAGAGCCAAAAAAGTTCTCTCTTTTTTAGTACCTATTATTGATTTTTGTTGTCACCATTATCATCAAAATCAAAGCTTTGTTCAGATTCAGAATTATCATCTGTATTATTATCAGCATTTAACTCATCAGCAATTTCAGCTGTATCGAGCAGTGAATTTAACGAGGTAGGTTTGCTATCTGAACATGGCTCCAACTCATTGTTTGGACTAATCAAGTTAGAGATTTTTTCTGGCAATAGATCAACTTTAGCATCAATTTGTTTTATCAAATCAATAAGCTGGTCATGATTATCAACTTGCAGACGCAGGTCTTGTACTTCTTTAGTAAGCGAAGTAATCAATTGCTTATCTGACTGTTTCTTAGCCTTCTCCAACTTAAAACGCTCAACAATTGCACGTTTAG # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTCGTAAATTGCAATAATAAATTGAACGCTTAAGCTGCTTGATAGATTTGATCTAATTCTCTCTCAAAGATTTAATCTGGCGTGTGATATGCCAGGATCTTTCTGGGCAAAGAGTTGCACCAGGTTTCAATATCAATGATTTGTTGGAGAGAATAGTTATTGATGCAGTCTCCTTTAGGAATGAATCTGCGGATCAGGCCATTATATCTTTCAACAGTTCCTTTATCACAAGTATCACAAGAAGTATAAGGATGAGCATAATAAATAAGCGTTTTAGAGACTTGTTCCAGATTAGCTAGATCCGCAAACTCTGAACCATTATTAGTAGTAATTGTCTTAAAGATATCGTTCCAATGCTCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13764-10962 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYW01000372.1 Lactobacillus helveticus strain JCM 1120 sequence372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13763 30 100.0 36 .............................. TCAACACCGCCATGTTTCATACATTTATGAACAAAA 13697 30 100.0 35 .............................. TCGTGTAGCTTAATCCAAGATCAGCTTTGCCAGCT 13632 30 100.0 36 .............................. GAAGTGATTCCAACCAGAACCAATCTGTTTGAACAT 13566 30 100.0 36 .............................. ATTAATAGAAGAATGATACTTCTTTACCAAATCCTT 13500 30 100.0 37 .............................. ATATTGGCGGTCTTTTTAAGGCAAAAAATTAATTTGA 13433 30 100.0 35 .............................. ACAGTTATGGTGGCTATTATGTCTATTGTGTCTAT 13368 30 100.0 37 .............................. TAGCTATGGTATAGTATATATAGTTAAAAAAGAAGAA 13301 30 100.0 36 .............................. TGACGTAGGAACTAGGTATGTTAGCTGTAAAAGCAA 13235 30 100.0 35 .............................. ATCTACAATAGTAGCTGGGATAACAAGACGTATAG 13170 30 100.0 37 .............................. AATGTATACCAGTCTATTGGTGGCATTGCTCGTACAG 13103 30 100.0 35 .............................. TTAATTGCAAGATTTACTCTTGTGCGACTTTCACC 13038 30 100.0 36 .............................. AAATATTGGTGTTCCAATTCTGGGACTGGCTTAATT 12972 30 100.0 35 .............................. GGCTAAAAGCTCGAAAGAAGTCGAAGGACTAACCA 12907 30 100.0 39 .............................. TTGCATAAAATGCGTCTCTTAATCTTGTCTTTGATTCAG 12838 30 100.0 36 .............................. TATTTTTGTATGGAAAAAGTAAGCGATTTAAATAGC 12772 30 100.0 36 .............................. GCATAAATAGTAAATTCTTTCATTTTTTGTACCTCG 12706 30 100.0 35 .............................. TCAACAAGCTTGATGGAGTTTAAATCCCGACCACC 12641 30 100.0 36 .............................. AAGCAAAATTGCAAAGTATGGTTACCAAAATCTTTA 12575 30 100.0 36 .............................. ACAACTAACGCTGCAAACAACGCACTAAGAAAACAA 12509 30 100.0 36 .............................. GTGCAAAATAAAAATATGCCTAAACGTTATATCAAA 12443 30 100.0 36 .............................. CTATCAAAGGCTTTACTCATGTTGGCTCTGGTCTGC 12377 30 100.0 37 .............................. CCAATCAAATCATCATTAAGGAAATCTGCTGCAAACG 12310 30 100.0 35 .............................. ATTTAGGACTGTCGTTGATCATCATCGTTAGTCTG 12245 30 100.0 35 .............................. CATTAATAGCCGTTGTCGTCTTACTTCTAAAGTGT 12180 30 100.0 36 .............................. TTCTCTGGCTCGGTAGGCTGTGTTTGTGCCGTAGTT 12114 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 12048 30 100.0 36 .............................. TGTAAGTGCTTGGTATTAATACCAGCAATGACGTAA 11982 29 96.7 37 ....................-......... TCATGGCTTAAAATCCTAATAGTACGAGTATTGTTAA 11916 30 100.0 36 .............................. CTATTCCGACTTGACCCAGATGAACTCACTAACCAC 11850 30 100.0 36 .............................. CAAAAATGGAACGGGTGGGAACGGTTTAATGAAATT 11784 30 100.0 36 .............................. TGAAATACTCTGAATCATGTTTAGCTTGATCGCCTG 11718 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 11651 30 100.0 36 .............................. GTATTCCTGTGGTACTGATTTGGTAGTTCAGCCTAT 11585 30 100.0 36 .............................. GATTATGCGTACGGCAATAACTCATGGCTACAAGTC 11519 30 100.0 36 .............................. TATGGCGAAAAATTAGAAGAAAATTTTGTCAAAATT 11453 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 11388 30 100.0 36 .............................. AGATTTGTGGGCGCTTTAATATTGAAAATGCAGAAG 11322 30 100.0 36 .............................. AATTCACGATTATATACTTCATCAGGTGCAAGACTA 11256 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 11191 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 11125 30 90.0 38 ............T.............G..T TTCTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 11057 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 10991 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ======================================= ================== 43 30 98.8 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //