Array 1 4348907-4347353 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN850107.1 Alloactinosynnema sp. L-07 isolate Alloactinosynnema sp. L-07 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4348906 29 100.0 32 ............................. CCGAACAGACAGCCGTCGTCGCGGTGGTCGCG 4348845 29 100.0 32 ............................. ACCACGGCCAGCAGCACCAACAGCACGACCTC 4348784 29 100.0 32 ............................. GGCCGAACCCGCAACGGGCACATCGTGTGGCT 4348723 29 100.0 32 ............................. CCGAACAGACAGCCGTCGTCGCGGTGGTCGCG 4348662 29 100.0 32 ............................. ACCACGGCCAGCAGCACCAACAGCACGACCTC 4348601 29 100.0 32 ............................. GCCACGTGGACGGTCCCCGCCGACGCGTGCAG 4348540 29 100.0 32 ............................. ATCTTGACGATGTTCTCCCAGAGGATGGTGCT 4348479 29 100.0 32 ............................. GGCACCGGCAGCGTGCCCGTCGGCCGCCGCGA 4348418 29 96.6 32 ............................A CTTGAAGATCGCGCCTTGGTCGTCGGCGACGG 4348357 29 100.0 33 ............................. GCCCGCCATCGTCGGGAACACGTCCTCGGAGTG 4348295 29 100.0 32 ............................. CCCCCGGATCAGTGGCCAGATCCACGCCGCGA 4348234 29 96.6 32 ............................G GCGATGTACAGCCGGTCCCGCGACTGCGGCAC 4348173 29 100.0 32 ............................. ATGAGTTCGACTAGGCGTCCCCGTCCGTCCCC 4348112 29 100.0 32 ............................. ACCGGCGGTGTGCCCAAGTCCCGCCTGCCACA 4348051 29 100.0 33 ............................. AAAGTCGCGGCCCGGCACGCGGGTGATCTCGCG 4347989 29 93.1 32 ..........................C.A CCCCGACGTCAACCCCGATGGTGAGACGGACC 4347928 29 96.6 32 ..........................C.. AGGTGGAGCTGCCGCGGCGGGGCGACGCTGCC 4347867 29 96.6 32 ..........................C.. ACAACACCGCCGCGCAGGACGCTGAGGACCAC 4347806 29 96.6 32 ..........................C.. GTTTGAACGGGTTGTTCCTGTTGGCTGAGGGT 4347745 29 96.6 32 ..........................C.. GAGTCGCGCGGAACCACGGTGTACGTGCGAAC 4347684 29 93.1 32 ..........................C.G TCGGGGGTGGCGCCTCGAACCGTGCGCGCCAC 4347623 29 96.6 32 ..........................C.. AGCCTGTGGCACTGGCTGATCGACACCGGCCA 4347562 29 96.6 32 ..........................C.. AGCGGCGTCACGCCCTCGAAGTCGCTGCGGCC 4347501 29 93.1 30 .........................CC.. CCACGAACACCGCCGCCAGCGCGGCGACGT 4347442 29 89.7 32 ...............C....A.....C.. ACGATCTCGTGGTCGTACCCGTAGCTGTCCAG 4347381 29 89.7 0 .....T..........T.........C.. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.4 32 GTCCTCCCCGCGCTCGCGGGGCTGTTTCC # Left flank : TATCTCCCGTTGAACCGGCCCCGATGTCGCCCGACCCCACCGAGCTTGAACCTTAACAATGAGCCGACGGGTGTCCCTCAGCCTTGTGGACTATCTACGTCGCCTTGGTCAACGTCGCGACTTCCCTCCGGGGATCGTCGATCGACGTCGTTGCGCGAGCCGTCGACGAGTCTGAACAGGCATTCAAGGGTGGTGGAGTCGAGCCAGTCGATGTCCTTCTGGAGCCGCCATCGCCCTTCTTATCGGTTAGCGTAAGAACTCTGGAGGACGTCGTCGCTGACACTTCATTAGATCAAGCAAGGATGGGGGCAACCGACCGTTCGCCGCGGGCTTGTGGAGTGCGCCGGATGCGTTCGCCCAGGTTGTGTCAGCCAGTTGATCTAGTGACCTGAGTCGGCAGGCCGTCGGATGAAACCCAGGTCTGCTCCGACCACAGGGAGGTGCAAGGCGAAGTGATTCAAAACTGCGCGGTTGTGCCGTAAACTTGCTGGTCAGCAAGT # Right flank : ACCATCTTGTCTGGACAGTTCACTCGTTCCAGGGACTGTCCAGACTGGACGCAGTGCATAGGGTTCCGGCCATGCGTGTGGTGGTCAAAGTGATCGATCCCAAGCCGGGCCGCCCTCGCGTGAGCACTGGTCAACACGGCTGGCAAACCAGTCACGGAGGTCTACGAGTTCTTGCGCTTGCTGGCGGGAATACTCCCGGCACACGATCCGCGCCTATGCCCATGATCTGCAGAAGCTCTTCCTGTTCTTTGAGGAACTCGGACTGTCCGCGGCGGAGTTCACGACAGCGCGGGCGATGGAGTTCCTGCACTGGCTACGGTTGGTGTCCTCGTCGCGGCGAGCGCAACGCCTGGAACTGGGGATCGCCACCAGCGAGGGACGAGTGCCCTCGGCGAAGACCTGCAATGGGTCATGGCTGCGGAATCGTCGTTCTACGAGTTCCTCATCGCATCGTCAGCCTTCTGAACGACCTCGGCGAGCCCCCACAACGAACCACATGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCTCGCGGGGCTGTTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCTCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4438606-4436251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN850107.1 Alloactinosynnema sp. L-07 isolate Alloactinosynnema sp. L-07 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 4438605 29 100.0 33 ............................. CAGCCCGCTGACGGTGCGCCGGACGAGGTGTCC 4438543 29 100.0 32 ............................. CCCGCCGACCGCGCCAAGGTCGAGGCCATGAC 4438482 29 100.0 32 ............................. ACGTTCTCCCGGCTGCGCGCCGCGCTGGACGA 4438421 29 96.6 33 ............................A GTGAGCTGGCTGAGATGCGCGGACGGTTCGTCG 4438359 29 100.0 32 ............................. CTGCCGCACCGCGAAGGCGAGATTGCCGCCCT 4438298 29 100.0 32 ............................. TGTCGTGGTTCTCGGACTGGAAGTCCGGTGGG 4438237 29 100.0 32 ............................. GACCGGCCCGCCAGACACTCGCATTCGTCGCC 4438176 29 100.0 32 ............................. GCCGCCCAACTGTCGGGTGCGGTGCAACGGTT 4438115 29 100.0 32 ............................. CCCATGCACACCGCCGTGGTCGCCGAGCGGAT 4438054 29 100.0 32 ............................. AGGCCGCCGAGACCGCCGCCAAGCGCATGGAC 4437993 29 100.0 32 ............................. CAAATACGTGTTCTTTCGTAGTGAGCACGTCG 4437932 29 100.0 32 ............................. CCCGCCGACCTGTGGCCGACCCTGGTCGCGCT 4437871 29 96.6 32 ............................A CAGACCGTCGAGCTTCGCGCCGACGGCCTTCG 4437810 29 100.0 32 ............................. TCGATGATCGGCACCAGGGCGACCGCGAGCTC 4437749 29 96.6 32 ............................A CGGCGGCGCACTTGGCGTCGTCATCGAGGGAC 4437688 29 100.0 32 ............................. TCGTCGGGGAGGCCGAGGTCAGCTGGCCCCAA 4437627 29 100.0 32 ............................. CTGGACGTGAAGGACATCGACCGGCGGTCCCA 4437566 27 93.1 32 .................--.......... AGACCCGAGATCGCCGACGGGGTCACCGTCAC 4437507 29 100.0 32 ............................. ACCCCAACGGGCACACGGTGACCGGCCGCTAT 4437446 29 100.0 32 ............................. CCGAACGAGCAGGTGCAGGCGCGGTGCCTGGT 4437385 29 93.1 32 .....................T......T CAAACCCCGATCAACAAATCCCGGTTGATCCG 4437324 29 100.0 32 ............................. GGATGCGCCAACTGCTTGTCCGTGCCGAGGTC 4437263 29 96.6 32 ............................G TGATCGGGTTGCCCAGCCGCGACCGCGCCGAC 4437202 29 100.0 32 ............................. CGTCCCCAGTCCAAACCGGACTCGATCAGCAG 4437141 29 100.0 32 ............................. GTCGGCCATCATCCATTCCGGCACAGGGCAGT 4437080 29 100.0 32 ............................. CGGTTGTAGGCGGTCAGCGACTCGAATTCGGG 4437019 29 100.0 32 ............................. TTGGCCGAGATGACGGAGATGAAGACGACCGC 4436958 29 100.0 32 ............................. CGGCCCGACTCCACCGACGTCGCCCTTGAGAA 4436897 29 100.0 32 ............................. GTGTTCGTCGCGTCGAGCACCGCCTGAAGGCC 4436836 29 100.0 32 ............................. TCCGCGACGGTCAAGCCCGCTTCGGCGAGCAA 4436775 29 100.0 32 ............................. AGACCATGCTGGCCCAGTTGCCCGACGGCGGC 4436714 29 100.0 32 ............................. GGGTGGCGCGCGGCGGAACATCGTCGCCTGTT 4436653 29 100.0 32 ............................. AGGGCTACCGGTGCGCCATCTGCGGGCGGCAT 4436592 29 93.1 29 ........T...................G GCCCGCCGCACGGCTCGGTCGGCTCCAAC 4436534 29 100.0 33 ............................. TGACGGACCCCGTCCAGTTCACGGCCCCCGCAG 4436472 29 96.6 31 ............................G GTGTCGCACCGGATCTGGCGCGCACGGGAAC 4436412 29 96.6 34 ..........T.................. GACGTGCGCGCCACGATGAGGTGTCGCCGAACAG 4436349 28 96.6 42 ....................-........ TCGACACCCGCGCGCTGGACGCCGTATGACACCGTCGACGCG 4436279 29 79.3 0 A........A..T............CGT. | ========== ====== ====== ====== ============================= ========================================== ================== 39 29 98.3 32 GTCCTCCCCGCGCTCGCGGGGCTGTTCCC # Left flank : GCCGCGCGCGGCAACACCGGCGGATTCACGGTCGTCCGCGACTACATCCACCGGCTACGCCCCACACCGGGCCACATTCAGCCATCCACGCCGACCGTCCGCCAAGGTCACTAGATGGTCAAACGCCCGATGTTCGGCCGTGCAACCTCGACCTGCTCCGCATCCGCGTCCTGCACCGAAACTAGCGACGATCACCGAGTCTGGGACAGAGCCATGATCCGAGTGCCGTTGAAATTGCTTGGGCCGAGCAGGCCATGGCTGCCTTTCGCCCGATCGCGGTCGAGCCGAACTCCCTCACAGTCGGCGATTGCCATGTCAATCTCGGCGCCGGAGGCGCCCGCGAATCAGAACGGCACGTTCACGTAAGTTGGTGTCGGCTCTTCGACCTGGCGCCCGACTGGGCATGATGGGGTCGATGCTAGATCTAGTCCGACGATGGGGGTGCAGTCGAAGTGATTCAAAACTCCGTAGTCGTTACGTAAACTTGCTGGTCAGCAAGT # Right flank : TGCCACGGGCATGGGACCAGTTGAGTGCTCGTTTGCCATGAGGATGGGTTCTGACGCAGGTTGCGTGATCAACTTCTTGCTTGGTGATCATGAAGTCTGTGATCATGTGCCCGGTGTGATCATCAGGGTCTTGACCTCCTTCTTCCGCATCTGGCCGATGTCGTGATCGACCGGGTCGACCACGACGAGGCAGGCGTCCGGATTTGGGCCCATTCCCGGTCGTGCTCCGCTGTCTGCCCGGCGTGTGGGCACTCGTCGTCGCGGGTGCATAGCCGATATGACCGGCAGGTAGCTGACGCGGCCATCGCAGGCCGGCCGGCGACGCTGCGGCTTCGCGTGAGACGGTTCTTCTGCGACACCCTGGAGTGTCCTCAGGGGACGTTCGTGGAGCAGGTCGAGGGACTGACCGCACGGTATGCCCGGCGGAGTCTCCTGCTACGACGGATGCTGGAATCCATCGGATTAGCGTTGGCTGGGCGCGCTGGCCAGCGTCTGGCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCTCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCTCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //