Array 1 7821-5475 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOTU01000005.1 Listeria monocytogenes strain CFSAN028894 AFY32_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7820 36 100.0 30 .................................... GAGCGCTGATTGATCCGCCAAGTTTAGGCC 7754 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 7688 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 7622 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 7556 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 7490 36 100.0 30 .................................... GGCAGATGAACTGTATATTAAATTTGGGGA 7424 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 7358 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 7292 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 7226 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 7160 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 7094 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 7028 36 100.0 30 .................................... TAAGCCTTCTTGGGCAGATAAAGATGTAGC 6962 36 100.0 30 .................................... TCTTTTCATTATACTCTATTCCCCTTAATA 6896 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 6830 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 6764 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 6698 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 6632 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 6566 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 6500 36 100.0 30 .................................... CTTAGTTTATCAGTTTATCACAATGGAAGA 6434 36 100.0 30 .................................... CGGGTCTTTTTTGACCACTTCGGAGAACAT 6368 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTGTTACTTG 6302 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 6236 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 6170 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 6104 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 6038 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 5972 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 5906 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 5840 36 100.0 30 .................................... CAGTACTTGAGTCAGCCACCTTCCATATAA 5774 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 5708 36 100.0 30 .................................... GTGCTGCTGTTAGAGAGTCATGTTCACGCA 5642 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 5576 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 5510 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //