Array 1 170576-167679 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSU02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0375 NODE_8_length_193337_cov_38.799338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 170575 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 170514 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 170453 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 170392 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 170331 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 170270 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 170209 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 170148 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 170087 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 170026 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 169965 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 169904 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 169843 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 169782 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 169721 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 169660 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 169599 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 169538 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 169477 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 169416 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 169355 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 169294 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 169233 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 169172 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 169111 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 169050 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 168989 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 168928 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 168867 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 168806 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 168745 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 168684 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 168623 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 168562 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 168501 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 168440 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 168379 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 168318 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 168257 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 168196 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 168135 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 168074 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 168013 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 167952 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 167891 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 167830 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 167769 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 167708 29 96.6 0 ............T................ | A [167681] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187966-187327 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSU02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0375 NODE_8_length_193337_cov_38.799338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187965 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 187904 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 187843 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 187782 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 187720 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 187659 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 187598 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 187537 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 187476 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 187415 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 187354 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //