Array 1 49389-49596 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWT01000073.1 Photorhabdus luminescens strain H1 H1_C73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49389 28 100.0 32 ............................ AGAACGAGAATATTGGTCATCACACTCTGTTT 49449 28 100.0 32 ............................ AGGGCTAGGTTAGAAACCTAAGAAGGATTATA 49509 28 100.0 32 ............................ TGTTTCATCGACAGCGGAAGAAACTGCATCAG 49569 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAAGGAAAAGGGCTGATGTATGAAGCTTTACAACCTGCTATTCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGAAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAGTTAGCCTTCCCCGTACCTTATTTTTGACCCTTTTTTAAGGGCTGATTTTAATTTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ACAAGAGTTTTATCCTGAGTAAGCTTTAGTGAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTGAAGTGGCTATTTGAGCTTTCTGTAGTAAGGCTAGTTGCAAGTCGCCATCATCTAGGCCGAATACGATGTTACATTGGCAGCTTATAAAAGTTAATGAGTTCTAGTGCATAAGCGTGGATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATGATTAACCTTGGTAGATTCACGTAATAAATGCAATATTGTTACTTTGGAAGTAAATATATTCTTATTCCTTTAAATAATTCATTGGATATTTTATTATTAGCTAATTGTTATGAAAATAATTTGAATGGTTTTTTTAATCCATAAAAATAGGTATTATCCTAATTGGCCTATTTAATAAGAATAACAATCTAATTGAAAAAAATAGATAAAAAAGAGTGAGTGAAAATAAATATTCATATAACTTGAGTCCGTACATAATTTTATGTTAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6902-6754 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWT01000029.1 Photorhabdus luminescens strain H1 H1_C29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6901 28 100.0 32 ............................ TACGACCGCATCAATAATCATCCCATCGCTAT 6841 28 100.0 32 ............................ TTGACAAGCTGCAATGTCTCTCTCCAATCAGC 6781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATTGATAGTGGCCGTGGAGTTTTAACTCACCAGGGGGATGCTATCAGAAATATTGAGGGTTCATTTCCTGGAGCGATAGTAGCTCATTTTGAGCTGGCAGCAAAAGGGGCTTTTTATGGTAATGCAACTTTTGGTGTAGCTACAGATGGAAAGCCTAAATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATACGGTTTTGGGTTCGATGCGTCAAGGGTTGTTCCAGTAGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGTTGAATAAAAATACTCTTTTATAGCTAGAATATAGAAGAGAGGCTGTTCTACTTGAATGAAAGAAATTTTGACCCTTTTTTAACGGAAAGTTTTAATTTATTGATTTTTTAAGTAAATATTATTTACCCCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : GACAACGCTACGTTGTTTTCCTTAGACTTGCGGATATGTTCTTCTAGACGGTAGCAAGTCATATTAAGATGATTAGGGGTATACAAGTATTGGTTTATAAAAACAAGTAATACTTGTTTTTTTAAGAAGGGTTTATTTTTATTGATTGTTAAAAATGTGACTGCTTAGACATTCTTAGGTGATAGTTAAGGATATAGGGCAGAAAAGCCACCGAGTGGTGGCTGGTATAGTTATTGTGCTTTCTTTCTAAAGTTATCGTCATTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTGATCCTCAATATATCTTCTGGAGCTTCTATAAATATTCTTGAGTTATTAGCAGATAATCCAGCCCTATTAACTTCGTTGGCTAATATATCAGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTGTTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10696-10548 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWT01000029.1 Photorhabdus luminescens strain H1 H1_C29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10695 28 100.0 32 ............................ ATAACAATCCTCCCGCCATATAAAGGCTGGTT 10635 28 100.0 32 ............................ CTTCACTACCGCCGTATTTATGAAATTCCGAC 10575 28 85.7 0 ....................T...A.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAACAGTTATTGGTGAACGGTTATCAATGTTTTATGGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCCGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAGATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGTGTCAATGGTAACTTAAAAACTTGCGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGCTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : CTTGAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGGTTGATAAATACTCTACCTCAAGGATGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGTTTTTCTCGTTTTACATGAAGCTACGCAAGCTTTATCAGATTAAATTTCCCTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTATAGCCTAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTCAAGTTCAATG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72893-73459 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWT01000039.1 Photorhabdus luminescens strain H1 H1_C39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 72893 28 100.0 32 ............................ AATTAGCTACGGCAATAGCGATTCTATCTTTA 72953 28 100.0 32 ............................ TCAAACAACGAGCTATGTTGAGCTAGACTTAA 73013 28 100.0 32 ............................ GTTATCATGCTGCGCTGATGGTCTACGGAGAA 73073 28 100.0 32 ............................ TTAGTTTGGCTTGTTTTCTCATGGCTTTTGCA 73133 28 100.0 32 ............................ TGTCAACTCAATCTGTGTGAAAAATACGCTAT 73193 28 100.0 32 ............................ TCGATAGCTGGCATGGAACATTAACCGGTTTT 73253 28 96.4 32 ...................A........ TTAAGTTGATAGAGTGAAAGAAGGCAAGGTAA 73313 28 100.0 32 ............................ CGCCGCTTGTGGCGGGATTCATCATATCAGCG 73373 28 100.0 32 ............................ TTTGCGACCTTTGATTACTTTTGCCATGTTTC 73433 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATTCCGAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGGAATGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGCAATTTTGGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTAGATATAAATGGGAGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATTGCGGATGGATTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAAGCTAATTGTGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTAGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTACATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTTGCTTTAATTGCGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12311-12818 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWT01000034.1 Photorhabdus luminescens strain H1 H1_C34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12311 28 100.0 32 ............................ ATTTCGTAACTTGCTGCGGTGTAACATGCATA 12371 28 100.0 32 ............................ AAACCAGGTTCAACATATCGACTTCGAACACT 12431 28 100.0 32 ............................ GATTAGAGGGCTGACTCATGGCGTTTATATGT 12491 28 100.0 32 ............................ AACTTCTAATTCGTAATCAATTGGCTTCGGAA 12551 28 100.0 32 ............................ TAAACAGCAAATCGCCTATCTGGCTGTGAAAT 12611 28 96.4 32 ...........C................ TCATCATGTAATGTTAGTGAGTCTGATACTAC 12671 28 96.4 32 ...........C................ ATGCCTTGTTGCTCCAATACAATTTCTCTATA 12731 28 96.4 32 ...........C................ GTGTGATTGCATATCTTTGATAACGCGGTCAC 12791 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACCAACGTAGTTGGTTATCGACTAGGAAAGCAGTTTCTGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGCTGGTTTTCTGAAGCATTGGATATCATTGCATTAACCAGATATGCGACCCTATTTTTACCCTTTTTTTGCAGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACTATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGTATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //