Array 1 228393-224356 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPS01000001.1 Serratia marcescens strain 642 NODE_1_length_392698_cov_7.08697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228392 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 228332 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 228272 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 228212 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 228152 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 228092 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 228032 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 227972 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 227912 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 227852 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 227792 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 227732 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 227672 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 227612 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 227552 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 227492 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 227432 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 227372 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 227312 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 227252 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 227192 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 227132 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 227072 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 227012 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 226951 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 226891 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 226831 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 226771 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 226711 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 226651 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 226590 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 226530 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 226470 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [226424] 226423 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [226415] 226362 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 226302 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 226242 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 226182 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 226122 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 226062 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 226002 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 225942 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 225882 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 225822 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 225762 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 225702 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 225642 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 225582 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 225522 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 225462 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 225402 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 225342 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 225282 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 225222 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 225162 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 225102 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 225042 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 224982 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 224922 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 224862 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 224802 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 224742 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 224682 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 224622 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 224562 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 224502 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 224442 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 224382 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 239616-237242 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPS01000001.1 Serratia marcescens strain 642 NODE_1_length_392698_cov_7.08697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239615 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 239555 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 239495 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 239435 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 239375 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 239315 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 239255 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 239195 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 239135 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 239075 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 239015 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 238954 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 238894 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 238834 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 238774 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 238714 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 238654 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 238594 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 238534 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 238474 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 238414 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 238353 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 238293 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 238233 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 238173 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 238113 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 238053 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 237993 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 237933 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 237873 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 237813 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 237753 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 237692 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 237632 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 237572 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 237512 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 237452 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 237392 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 237332 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 237272 28 96.4 0 ....................A....... | G,A,A [237245,237249,237251] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //