Array 1 19742-20561 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCL01000016.1 Lactobacillus acidophilus strain LA_AVK1 NODE_16_length_20611_cov_41.3518_ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19742 28 100.0 33 ............................ TAAGAGAAAACGGTGGTTTCCTCTTATTTTTAT 19803 28 100.0 33 ............................ TAAATCCGGACAACGCTTGCCACCTACGTATTA 19864 28 100.0 33 ............................ TCATTGAGACACACATTGCGACGACTAAACTCT 19925 28 100.0 33 ............................ TTTTAATGAAAGGTGCTAGTTTTGTGACACTTT 19986 28 100.0 33 ............................ TGATTTTCCAGATTCGGCTACTATTTTGGCAGA 20047 28 100.0 33 ............................ CTTAGGCTATTCCGCACACAATATGTGGCGTGG 20108 28 96.4 33 ...............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAA 20169 28 100.0 33 ............................ CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCC 20230 28 100.0 33 ............................ TGCTGCTACGAGCGCTTTTGGTCACATTAAAGA 20291 28 100.0 33 ............................ TCATTGATGCACCGGTACTTAACTCAAATCAAA 20352 28 100.0 33 ............................ TGACTACGATATTTTCTTTTAATTATATCTTGG 20413 28 100.0 33 ............................ CAATATCATCAGCATTTTTCACACCAGAAAATA 20474 28 96.4 33 A........................... CGATTTGCGTGGCAAATGAATGGTTGATCTTGA 20535 27 92.9 0 A...................-....... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 33 GTTTTCTCCACGTATGTGGAGGTGATCC # Left flank : GCGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGT # Right flank : TATTCTTTTTCACTATCAAAATCAAATATTTCTATTTTCTCCACGTATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 102-557 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCL01000009.1 Lactobacillus acidophilus strain LA_AVK1 NODE_9_length_65123_cov_37.3418_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102 28 100.0 33 ............................ CGGAATGTATGATAAAAATTGGCTATTTGCCTA 163 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 224 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 285 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 346 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 407 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 468 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 529 28 71.4 0 ..........AAA.A......C.C..TA | A [552] ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.4 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : AAAATATCGTAGTCAATCTCGTACTTAAAACCACCCTGGATACTCCACATACGTGAGAAATCAGGTTGACTTGCGCTAGGTGTTTGTTTCAAAAATTGCCGA # Right flank : AACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //