Array 1 15177-14722 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGH01000524.1 Escherichia coli strain KCJ3819 NODE_112_length_15208_cov_3.07473_ID_225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15176 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 15115 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 15054 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 14994 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 14933 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 14872 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 14811 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 14750 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCCACGGTTCGACGCCGATCGCCGTGGCTA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 746-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGH01000356.1 Escherichia coli strain KCJ3819 NODE_101_length_16496_cov_2.82192_ID_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 745 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 684 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAATAATGAG 623 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 562 29 100.0 32 ............................. CCTACCTTTTAACACAACCACGCTTTATTGCA 501 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 440 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 379 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 318 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 257 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 196 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 135 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 74 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GAGAATCTGGACACTGCATATACCGCAATCCGTGTGTTCCCCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16459-16247 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGH01000356.1 Escherichia coli strain KCJ3819 NODE_101_length_16496_cov_2.82192_ID_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16458 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 16397 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 16336 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 16275 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGCCGAGCCCGATTATCGGCATGAGCGATGCGG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1199-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGH01000554.1 Escherichia coli strain KCJ3819 NODE_447_length_1263_cov_2.31426_ID_897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1198 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 1137 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 1076 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 1015 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 954 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 893 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 832 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 771 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 710 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 649 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 588 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 527 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 466 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 405 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 344 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 283 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 222 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 161 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 100 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 39 28 86.2 0 ......................-.C..GT | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : TCGGCAGAGAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //