Array 1 142293-145795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH636017.1 Bacteroides sp. D2 supercont2.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 142293 47 97.9 30 G.............................................. CTATTTACGCCGGACATGTTCGAACATGGG 142370 47 97.9 29 G.............................................. AATGACATTAAGAAGGGCGACATGTTGGA 142446 47 97.9 30 G.............................................. GAAAACATTTTCCACAGATCGCACTCTAGG 142523 47 97.9 30 G.............................................. ATCTCGTTCTGCAACTTTAGCACCCTAGCC 142600 47 97.9 29 G.............................................. GTCCAACAGATAATTAGGATAAACCTAGT 142676 47 97.9 30 G.............................................. CTTGCTGTCTGCATCGCTGCCAGTCCGGGA 142753 47 97.9 30 G.............................................. AAACGGTTTTCGGGCGCAATTCCCGACATA 142830 47 97.9 29 G.............................................. AGAGGATTGTTGGTCAACAGTCTGTTCCA 142906 47 100.0 30 ............................................... CAAGGTGCGGGACGATCGCAATACGCGTAT 142983 47 100.0 30 ............................................... GGTACTACATGGAGCTTGGAATTATACCAA 143060 47 100.0 30 ............................................... GAGGAAGCCAACGCCTATCAGAAGCTCATA 143137 47 100.0 29 ............................................... AACGTTACGAGGTTACCCCCGCGGGTACA 143213 47 100.0 30 ............................................... CCCGAACATAAGAGGGATCGCGAGCAAAGG 143290 47 100.0 30 ............................................... GTCTTTCCTAACCGTTGCCCGCCATCGACT 143367 47 100.0 30 ............................................... TTTAGTGATTGCAATAGTATTGACGTTTTT 143444 47 100.0 30 ............................................... CGGGACGTACGATACTAATCTAGTTATGGT 143521 47 100.0 30 ............................................... CCGATAACAAACTCGCAATACTCCCGTATA 143598 47 100.0 30 ............................................... ACGCCTGTTATCACTAACGAAACGGTACGC 143675 47 100.0 30 ............................................... CATAGCTGTTGGCGGTTTCGCCCGCCTCTA 143752 47 100.0 30 ............................................... GCTATTTGCAGTTGCGCCAAATAGTATTCG 143829 47 100.0 30 ............................................... ATATTCAGCTTTAAATGTGTCATTGATTCG 143906 47 100.0 30 ............................................... ACTCGGCGCTCTAGGAACATGCGGCACGTG 143983 47 100.0 30 ............................................... AAGTGTTTGATTACGTGCGTATGATGCTTG 144060 47 100.0 30 ............................................... AACTACCTCTAATACAGGGGCGCAATTAGT 144137 47 100.0 30 ............................................... CGTCTTGTCAGATACAAGTGTTACGTCTAC 144214 47 100.0 30 ............................................... GCTCGGTTAGGTCTTGACCTTCTTTGCTAG 144291 47 100.0 30 ............................................... GAATCATGAAAGATAAAATTTTAATCATCG 144368 47 100.0 29 ............................................... ATCTCAAAGTTTTTTCCGAAAACATTTGG 144444 47 100.0 30 ............................................... TTTGGATGATCGTAGAGTATACCGGAGCGG 144521 47 100.0 30 ............................................... AAGCGAGTTCTATGTATCTAGCAACATTAT 144598 47 100.0 29 ............................................... GAGAATTACAAAAGCCCGTTAAAGGATGG 144674 47 100.0 30 ............................................... TTTGACCAAACACAGTTGGCGGCGTTCATG 144751 47 100.0 30 ............................................... CTTATCGCCTTTCTTATCCAAGTCCCAAAC 144828 47 100.0 30 ............................................... CAACAGGGCAAAGTAACCGAGCTTGCATTA 144905 47 100.0 29 ............................................... CGGATCGTACGCGCCGTTTAGGTACTGCG 144981 47 100.0 30 ............................................... ACCTTTTCGCTAGTTTCCGTTGCCTTCATT 145058 47 100.0 30 ............................................... GGCAGGAAAACAATATCACCGCGCTTAACA 145135 47 100.0 30 ............................................... CTGATACCCAAAACGGACTTATGAATACGG 145212 47 100.0 30 ............................................... TCGGATCGTACGCGCCGTTTAGGTACTGCG 145289 47 100.0 30 ............................................... CAAAGTATATTTAAACAGCCACTATAAAGT 145366 47 100.0 30 ............................................... GACACGATCGGGAAGCCCTTTTCAATCCCG 145443 47 100.0 29 ............................................... TTCCTGCATTTGCAATAAAGCAGATGGGG 145519 47 100.0 30 ............................................... TTGTACTTTTAGAATCTCGTCAAGTCGATT 145596 47 100.0 29 ............................................... CTATGAGCAGGAAAGTTAAACCGCAATTA 145672 47 100.0 30 ............................................... TTTTGATTTTTCCAAAACACAGACATAGAC 145749 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 46 47 99.6 30 ATTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Left flank : ACGGGGCACAGAGAATGGCAATCGTCCTGCCGGATTAAAATCGCCGAATAAAACATCGGCAATGGCAATCCCTCCTTCTTGTCCCGGGTAATAAGCGGTTAACACTGCATCTGCATTTTCTGATGCCCAGTTTTTATCCAAGGGACGGCCTTCAATATAAATGACTACCAATGGCTTTCCGGTAGCTTTCAAGGCGTTGAGCAGTTCCTGTTGTTTTCCTAACAAAGAAAGTGTTACACGGTCGAACCCTTCGCCACATTCCATATCGCTAATCGTCTTTTCGTCGGCAATGGCCGCACCCGTTTCTTTATAACTGGTCTTGAAATCACGGGCACTGGAACCTCCCACTACAGCAATAATGACTTCGGAACGCTGGGCAACTGCAATAGCTTGTTCAATATCAGTTGTCACAGTATCACGAATGAAGCAGTCTTTCACATATTCCACTTGCAACGGAGATAGTTTAGTCCTGATTCTATCCAATTCTTCGTAGCTAGCAG # Right flank : CTGATCCAGCATAACAAAGTGTGTTTCAGTGAGTTAAGAAGATAATCAGAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTTTCTTAGAATAACTCCAATTGTTGTCCCGGGGTATTGACACAAGACACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTGTCTGTGATACACATGATTCCGACATGTCCATGCTCTGGAAGAAAAGATTTAACTCTTTTTATATGTACTATCGCATTCTCGCTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAGCCATCCTTTTGCAGATTCTTTCTGAAATCCGCATAGGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAGAACAAGCACCCACATAACACGATATTCACTAAAACGATCCATTATCGTTCAGGATAAACAACTCGGCGAAGCTCCCCACTAAAACATTTATAAAGTGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 569898-572089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH636027.1 Bacteroides sp. D2 supercont2.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 569898 47 91.5 30 A.........A....T.........A..................... CCAGAAACCAAGCCTTTTTCAAAGCTTCAC 569975 47 97.9 29 ......G........................................ CTTAGGAAACCTTTCTAAAGCACTGGACT 570051 47 100.0 30 ............................................... ACAAGTTGGCGGACGCCGTAGCGGAAGCAA 570128 47 100.0 29 ............................................... CTTAGGAAACCTTTCTAAAGCACTGGACT 570204 47 100.0 30 ............................................... ACAAGTTGGCGGACGCCGTAGCGGAAGCAA 570281 47 100.0 30 ............................................... ACATGCTGTTAGACGAAGGACTATGGGACG 570358 47 100.0 29 ............................................... CATGTTCTGCCAAATATTATTGACTTCCC 570434 47 100.0 29 ............................................... AATCGATAAAGGTAAACGCCCGATCACGG 570510 47 100.0 29 ............................................... AGTTTGTTCGGATTCATCAAGATACTTAT 570586 47 100.0 30 ............................................... TATACGTATCGTAGCGCATACGCCCGACGG 570663 47 100.0 30 ............................................... ACCCAGACTTAAAACGCACATCAGCAGGTA 570740 47 100.0 30 ............................................... TCGAGGCTAGGCGATCGGAGACAGCAAGCG 570817 47 100.0 29 ............................................... CCGTATAATAATATATCTTTGTGACGATA 570893 47 100.0 29 ............................................... GAAATGGTTTACTGACCACGGGATAGCCG 570969 47 100.0 30 ............................................... TCAATACCTCCGTACTCCTCGCATTCCTTC 571046 47 100.0 30 ............................................... ACAAGTTGGCGGATGCCGTAGCAGACGCAA 571123 47 100.0 30 ............................................... GTGTGATCGCAGCCGTTCCGCCCGCTTTAC 571200 47 100.0 29 ............................................... TTTAATCAATTTAATATTCTAAGGTATGG 571276 47 100.0 30 ............................................... CATACGTTAACAACTTTGTAGAGCTGTCTG 571353 47 100.0 30 ............................................... GACGTGACGAACGCGTACAAGCCGCTAGGC 571430 47 100.0 30 ............................................... GAGGAGTTTTTAGACTTGATCCGCGATGAG 571507 47 100.0 30 ............................................... CCGACGTGGTTATGTACGAGGCAGCCGCAC 571584 47 100.0 30 ............................................... TTCATAGCGTCTAACCGGGCTAGCTCACTA 571661 47 100.0 30 ............................................... TTTGCGCCTCTAGATATTTCTTGATAGGGT 571738 47 100.0 30 ............................................... CGGAACGGCTGCGATCACACCGGACGACGT 571815 47 100.0 29 ............................................... GCGTCTATTTTTATGTGAAAGATACCGGT 571891 47 100.0 29 ............................................... CTATCATTATCTAGTTCGCTATCTGTTAA 571967 47 100.0 29 ............................................... AATTTGTTCATCAGGGCATTGGTGATGTG 572043 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 29 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAT # Left flank : AGGATCTCCTAGATGTTTTGTTATAATCTTATACTGTTTCATCGTCAAATAACGATGATTATACGGCATATAACCAGTCGGTACAAGCTCTTTGGTCAACGGGTTACAGTCTTTAATCCATCGGCTCAGACAACGCACTGCATTTTTACTGGTCGTACATCCGGGGAAGTACAATGCAGCTAATACTGCAAAAGATAAGATTCGTCTCATTTCGTTTTTAAAGTTTTAATTTGTCGTTTCATTGTTTCTTTCGTTCTACAAATATACAACATCAAAAAGCGTTTGTCAAGTCATTTGGGATTTTATCGTTAATATAAAGGAATACCCACCTTTATTAACCCAATTACTAAGCAATTGAAACAGATTGAGCATTCTCAATATTTAACACTAGAATTAAGTCTAATGCTCACAAAAGGAAACTTAAAAATACTTATACGAAAATGACAATCTTTAAATCACAAGAAATAACATATTTATACTAAAAAGAGATGCATGAATGG # Right flank : TACATTTCATATAATAAAATGTAATTCAATTAGTTACAAAGAAGATTAGAAAAGAAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTGTTCTAAAACAATTCCAATTGCTGCCCTGGTGTATTGACACTCTGCGCCTTCTTTCCATAGAAAAGTTCTATGTCCCCAAATTGTTTATCCGTAATACACATGACTCCGACATGCCCTAGTTCCGGAAGGAAAGATTTAACTCTTTTTATATGTACTGCTGCATTCTCGCTACTAGCACAGTGACGTACATAAATGGAAAACTGAAACATCGTAAAACCATCTTTTTGCAGATTCTTTCTGAAATCCGCATAAGCCTTCTTTTCCTTCTTCGTTTCAGTTGGCAAATCAAAAAGAACGAGCACCCACATTATACGATATTCACTAAGACGATCCATTACCGTTCGGGATAGGCAACTCGACGAAGCTCTCCATTGAAACATTTATAAAGTGAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //